Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq17 145 8e-30 >seq17 Length=1338299 Score = 145 bits (160), Expect = 8e-30 Identities = 269/395 (68%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987 ||||||||||| ||||| ||| || | |||| | | || || || |||||| | | Sbjct 168481 CCACAGATGTCATCGTGCTTCTTGCTCACGATGAGCGAAGATTCGATTCTCGGAATCTAC 168422 Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047 |||| || || | ||||| |||||| || || || ||||| || ||| |||| Sbjct 168421 GACACTCTGAAACAGTGTGCACTCATCTCGAAGAGTGCTGGAGGAATTGGTCTCAATGTC 168362 Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107 ||| | | ||||||| || || |||| ||| |||||||| || ||||| || || Sbjct 168361 CACAAGATTCGTGCCACCGGATCAGTCATCGCCGGAACCAATGGAACTTCCAATGGACTT 168302 Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167 | || |||||||| || | ||||||| | || || || || || || || || | | Sbjct 168301 ATTCCAATGCTCCGTGTTTACAACAACACTGCTCGTTATGTCGATCAAGGAGGAAACAAG 168242 Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227 | ||| | ||||| ||||||| ||||| |||||||| ||||| | ||| || Sbjct 168241 CGTCCAGGTGCATTCGCTATCTATCTTGAGCCATGGCACGCCGACGTCTTCGAGTTCGTC 168182 Query 94228 GACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTC 94287 | || || || ||| ||| || ||| | || | ||| | ||| || ||| Sbjct 168181 GCTCTCCGCAAAAACACTGGCCCAGAAGAAGAGCGCGCTCGTGACTTGTTCCTTGCCCTC 168122 Query 94288 TGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAA 94322 ||||| ||||| || || |||||||| |||||||| Sbjct 168121 TGGGTTCCAGATCTCTTCATGAAACGTGTCGAGAA 168087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494702761747800