Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq40 122 7e-23 >seq40 Length=584315 Score = 122 bits (134), Expect = 7e-23 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 118177 TTCCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATAC 118236 |||| || | ||||| ||||| ||||||||||||| || || | |||||| || | || Sbjct 326822 TTCCATCTCTTCCGGCTCTTCCAGTCTCTTGATAATATCCTTCAATTGATTTCGGTAGAC 326881 Query 118237 TGTGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCG 118296 ||| ||| || || ||||||||||| ||||||||||| ||||| || || || || || | Sbjct 326882 TGTAATGAATTACGAACCGCACGTCCGGTTTATCGATTCCCATTCCAAATGCGATTGTAG 326941 Query 118297 AACATATCACTCGGGTCTCGTTCGCCATCCATCTGTTCTGCACGGAA 118343 ||||||||| || ||| |||| ||| || || ||||| ||| Sbjct 326942 CACATATCACATCAAACTTGTTAGCCAACCAGCTTTTTTGCACTGAA 326988 Score = 95.1 bits (104), Expect = 9e-15 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 118194 CTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTGTGATGTATCACCAAC 118253 ||||| ||||||||||||| || || | |||||| || | ||||| ||| || || | | Sbjct 391032 CTTCCAGTCTCTTGATAATATCCTTCAATTGATTTCGGTAGACTGTAATGAATTACGAGC 391091 Query 118254 CGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCGAACATATCACTCGGGTC 118313 |||||||| |||||||| || ||||| || || || || || | |||||| || | Sbjct 391092 CGCACGTCCGGTTTATCAATTCCCATTCCAAATGCGATTGTAGCACATATAACATCAAAC 391151 Query 118314 TCGTTCGCCATCCATCTGTTCTGCACGGAA 118343 | || |||| ||| || || ||||| ||| Sbjct 391152 TTGTAGGCCAACCAGCTTTTTTGCACTGAA 391181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381757422310920