Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq157 96.9 3e-15 seq156 96.9 3e-15 seq19 96.9 3e-15 seq7 82.4 8e-11 >seq157 Length=243809 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | ||||||||||| |||||||||||| Sbjct 218213 CCTCCACGGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAG 218154 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||||| || |||| |||| || | || || || || || Sbjct 218153 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGA 218094 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | ||| |||| | ||| || Sbjct 218093 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 218034 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTATAATA 138625 |||| || | || ||||| |||||||| || || || || |||||| || | |||| Sbjct 218033 TCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAAATA 217976 >seq156 Length=445966 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | ||||||||||| |||||||||||| Sbjct 424334 CCTCCACGGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAG 424393 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||||| || |||| |||| || | || || || || || Sbjct 424394 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGA 424453 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | ||| |||| | ||| || Sbjct 424454 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 424513 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTATAATA 138625 |||| || | || ||||| |||||||| || || || || |||||| || | |||| Sbjct 424514 TCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAAATA 424571 >seq19 Length=917137 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | |||||||| || ||||||||||| | Sbjct 766493 CCTCCGCGGAGACGAAGAACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 766552 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||| || || |||| |||| ||||| |||||||| || || Sbjct 766553 AGAGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGA 766612 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || ||| || || | | || | |||||||| | ||||||| Sbjct 766613 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGAAGCCTCCACC 766672 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||| ||||||| ||||| || || || |||||| Sbjct 766673 TCCAGGGTGATGGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATG 766720 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||| ||| || || || |||||||| ||||| |||| Sbjct 766298 GACTCCTTTTGAATGTTGTAATCGGACAAGGTGCGGCCATCCTCGAGCTGTTTTCCGGCG 766357 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || ||||| || || || ||||| ||||| ||| || ||| | Sbjct 766358 AAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTAACA 766417 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| || || | || | || || || || ||||| || Sbjct 766418 TTCTCGATGGTGTCAGAAGCCTCGACTTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTG 766477 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 766478 ACAAAGATCTGCAT 766491 >seq7 Length=1891389 Score = 82.4 bits (90), Expect = 8e-11 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 ||||| ||||||| | || | || || || ||||| || | || |||||| | | Sbjct 174129 ATCGAGCAGGAGTTCCTCACCGAGGCACTTCCAGTCGACATGATCGGAATGAACTGTC-G 174071 Query 52686 TC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCC 52744 || ||||| ||||||| ||||| || ||||||| || | | ||||||| || Sbjct 174070 TCTCATGTCGCAGTACATTGAGTTCGTCGCGGATCACTTGCTCGCCGAGCTCGGAT-GCG 174012 Query 52745 A-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCA 52803 | |||| ||||| | || || || || || ||| | ||||| || | || || | Sbjct 174011 ACAAGTTGTTCAAGGTGAAGAACCCATTCGACTTCATGGAGAACATCTCCATCGATGGAA 173952 Query 52804 AGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAGCGT 52844 |||||||||| ||||||||||| ||| |||||| ||||| Sbjct 173951 AGACCAACTTCTTCGAGAAGCGCGTCTCCGAGTACCAGCGT 173911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496241898159600