Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq19 91.5 1e-13 seq157 87.8 1e-12 seq156 87.8 1e-12 >seq19 Length=917137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || ||||| |||||||||||| |||| | | | || || ||||| Sbjct 764584 ATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAATTG 764643 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | || | | || ||||| ||| |||||||||||||| || || Sbjct 764644 CTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 764703 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || |||| || || ||| ||| || || ||||| ||||| || || || Sbjct 764704 AGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGGT 764763 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || ||| || || || || |||||| Sbjct 764764 CAAAGTCTTGACGAAGATCTGCATA 764788 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||||||||| || ||||| ||||| || ||| ||| | | | || || Sbjct 765318 ACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCCTCC 765377 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 ||||| || |||||| | ||||| | || ||||| ||| ||||||||||| || Sbjct 765378 AATTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 765437 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || ||||| ||| || || | || || || || Sbjct 765438 ATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTTCGACCTCGAGAGTGATAGTCTTT 765497 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || ||||| |||||| Sbjct 765498 CCAGTGAGAGTCTTGACGAAAATCTGCATA 765527 >seq157 Length=243809 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || || || || || ||||| |||||||| ||| |||| | | | || || Sbjct 218196 AACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 218137 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | |||| | || || || |||||||||||||||||| Sbjct 218136 GAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 218077 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || ||| | || || |||||| || || || | |||||| || || Sbjct 218076 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTT 218017 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT-ATTTGAAATAAA 15188 ||| |||||||| || || || |||||||| | | ||||||| Sbjct 218016 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAAATAAA 217974 >seq156 Length=445966 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || || || || || ||||| |||||||| ||| |||| | | | || || Sbjct 424351 AACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 424410 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | |||| | || || || |||||||||||||||||| Sbjct 424411 GAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 424470 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || ||| | || || |||||| || || || | |||||| || || Sbjct 424471 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTT 424530 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 ||| |||||||| || || || |||||||| ||||| Sbjct 424531 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAA 424568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357377604361925