Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq19 116 4e-21 seq157 100 3e-16 seq156 100 3e-16 >seq19 Length=917137 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||||||| | || ||||| |||||||| ||||| || || ||||| ||| || Sbjct 766054 CACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCCTC 766113 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 | ||| ||||| ||| |||| | || ||||||||| || || || |||||||||| | | Sbjct 766114 CAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGT-CTT 766172 Query 127024 GATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || | | || |||| | ||||| ||||| | | |||||||| | || | || | Sbjct 766173 GAATCTTGGCTTTGACATTTTCGATTGTGTCGGAAGCTTCGACTTCAAGTGTGATAGTCT 766232 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||| ||||| || ||||| |||||||| Sbjct 766233 TTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766263 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| |||||||| ||||||||| || ||||| ||| || Sbjct 766283 ACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGACAAGGTGCGGCCATCCTCG 766342 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||||||||| ||| |||| | || ||||| || || || || || |||||||| | Sbjct 766343 AGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 766402 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || || | | |||| |||||| | | ||||||||| | || | || || Sbjct 766403 ATCTTGGCTTTAACATTCTCGATGGTGTCAGAAGCCTCGACTTCAAGTGTGATAGTCTTT 766462 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| ||||| || ||||| |||||||| Sbjct 766463 CCGGTGAGAGTCTTGACAAAGATCTGCAT 766491 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | |||||||| || || || || || ||| || ||||| ||| || Sbjct 764807 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCGGCCATCCTCG 764866 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| ||||| ||| ||||||| ||||| ||||| || || || ||||||||||| | Sbjct 764867 AGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGG 764926 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| |||||| | |||||||| | ||| | || || Sbjct 764927 ATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTT 764986 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || || || || |||||||| Sbjct 764987 CCGGTGAGGGTCTTCACGAAGATCTGCAT 765015 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 ||||| || || | || | || | ||| | || ||||| || || || || || ||| Sbjct 763821 GCTCCTCCACGAAGACGGAGAACGAGATGGAGGGTCGACTCCTTCTGGATGTTATAGTCG 763880 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || ||||| ||| || ||||| ||||| ||| ||||||| ||||| ||||| || Sbjct 763881 GACAAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGT 763940 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || ||||||||||| ||| || ||||| | |||| |||||| | ||| Sbjct 763941 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCG 764000 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| | ||| | || || ||||| || || || || || |||||||| Sbjct 764001 ACTTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 764050 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||||||| | || ||||| ||||| ||||||||||| | || | ||| || Sbjct 765545 CACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAAAGAGTTCTTCCATCCTC 765604 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 | || ||||||||| |||| | || |||||||| || || || ||||||||||| Sbjct 765605 CAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATTCCCTCCTTGTCTTG 765664 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 |||||| ||||| | ||| | |||||| | |||||||| | ||| | || || Sbjct 765665 GATTTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTT 765724 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || || |||||||| Sbjct 765725 TCCAGTGAGGGTCTTGACGAAGATCTGCAT 765754 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||||| || |||||||| || || ||| | |||||| ||| || Sbjct 765318 ACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCCTCC 765377 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | || ||||||||| ||||||||| ||||| || || || || || ||||| ||| | Sbjct 765378 AATTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 765437 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | || | ||| || | ||||| |||| || | || || Sbjct 765438 ATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTTCGACCTCGAGAGTGATAGTCTTT 765497 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || ||||| || || ||||||||||| Sbjct 765498 CCAGTGAGAGTCTTGACGAAAATCTGCAT 765526 >seq157 Length=243809 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| ||||| || ||||| ||| | || || ||| || Sbjct 218195 ACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCG 218136 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || ||||| ||| |||||| || |||||||| || || || || |||||||| | Sbjct 218135 AGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 218076 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| ||| || | ||||||||||| ||| | || || Sbjct 218075 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTA 218016 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || |||||||| || || || || |||||| || Sbjct 218015 CCCGTCAGAGTCTTGACGAAGATTTGCATGACT 217983 >seq156 Length=445966 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| ||||| || ||||| ||| | || || ||| || Sbjct 424352 ACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCG 424411 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || ||||| ||| |||||| || |||||||| || || || || |||||||| | Sbjct 424412 AGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 424471 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| ||| || | ||||||||||| ||| | || || Sbjct 424472 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTA 424531 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || |||||||| || || || || |||||| || Sbjct 424532 CCCGTCAGAGTCTTGACGAAGATTTGCATGACT 424564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475481155873200