Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1827 86.0 8e-12 >seq1827 Length=14047 Score = 86.0 bits (94), Expect = 8e-12 Identities = 119/164 (73%), Gaps = 12/164 (7%) Strand=Plus/Plus Query 31934 AGAGGACTTGAACCTCCACGTCGCA--AGGACACTGGAACCTAAACCCAGCGCGTCTACC 31991 |||||||| ||||||||||| | || ||| | |||| |||| |||||||| || Sbjct 6866 AGAGGACTCGAACCTCCACGGGGGGTTAGCCCACACGGACCTGAACCGTGCGCGTCTGCC 6925 Query 31992 AATTCCGCCA-TACCG--------ACTGGCGACTCAAGTAGGATTCGAACCTACGACCGA 32042 |||||||||| |||| | ||| || ||| | ||| |||||||| |||| Sbjct 6926 AATTCCGCCACGACCGCAAAATATAATGGTGAGTCATGAAGGGCTCGAACCTTCGACACC 6985 Query 32043 CTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTATTGAGTCA 32086 ||| ||| ||| ||| ||||||| ||| |||||||| ||| ||| Sbjct 6986 CTGATTAAAAGTCAGGTGCTCTA-CCAACTGAGCTAATGACTCA 7028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622099098469200