Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq17 152 6e-32 >seq17 Length=1338299 Score = 152 bits (168), Expect = 6e-32 Identities = 343/513 (67%), Gaps = 7/513 (1%) Strand=Plus/Plus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 ||||||| ||||| ||||| |||| || | || ||||| | | | || |||| Sbjct 167174 CCCACATGTCAAATTGGAGTTGCCCTTTTGAGACAGGTGATCCTTGATAAGTAGAGTATG 167233 Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 | || || ||| ||||||||| | || || ||||| || || | || ||||| || | Sbjct 167234 GTCCATCTTTCTCAGCCAATTCGCAACTGGCTTCGAGAGCAGCATAGTAGATTGTTTCGA 167293 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAA 116242 | ||||| |||| | |||| | || ||| || | || | ||| || | Sbjct 167294 AGATGCGCTTGTTCAAATCTCTGGCTCCTTCTGAAGTGAATGGGAATCTCATCAACATGA 167353 Query 116243 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTC 116302 | ||| ||||| ||||| || || || |||||||| ||||| | ||| || || || | Sbjct 167354 AACAATCAGCGAGTCCTTGAACTCCAAGTCCAATTGGACGATGACGCATGTTCGAGTTAC 167413 Query 116303 GAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 116362 | || || || || ||| |||| |||||| | | | || |||||||| || | | Sbjct 167414 GTGCTTCTTCAACTGGGTAATAATTGACATCGATGATCTTGTTCAGATTTTTCGTTATCA 167473 Query 116363 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 116422 | || || | ||| |||||| | | ||||||| | |||| | ||||| | Sbjct 167474 CTTTGGTAACCTCAGCAAGCTTCTTGAAATCAAACGTCT---TCTCAGGAGTGACAAA-- 167528 Query 116423 TAGGA--AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 116480 | || || ||||| || || ||||| || |||| | ||||||| | ||| |||||| Sbjct 167529 TCGGTTGAGAGCGATAGAAGCAAGATTGCAGACAGCGATCTCATCTGGAGCAGAGTACTC 167588 Query 116481 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 116540 || |||||||| |||| ||| || | || ||||| || | ||| | |||||| ||||| Sbjct 167589 GATGATTTCCGTGCACAGATTGGAGCATTTGATGGTTCCGAGGTTTTGTTGATTGGACTT 167648 Query 116541 TGTGTTACACGCATCCTTGTAGAGCATATATGG 116573 || |||||||||||| || ||||| Sbjct 167649 GCGATTGGCAGCATCCTTGTAGGTGATGTATGG 167681 Score = 150 bits (166), Expect = 2e-31 Identities = 299/440 (68%), Gaps = 6/440 (1%) Strand=Plus/Plus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || |||||||| |||| |||||| | || | |||||||||| | Sbjct 166620 GTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATACC 166679 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 || | |||| | ||||| | ||| | ||| |||||||||||||| ||| Sbjct 166680 GGCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGATTGATCGATGAATGCTCC 166739 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 ||||| || ||||| || || | |||||| ||| ||||| || || | |||||| Sbjct 166740 ACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCATACTGTGCGGTAGAG 166799 Query 115743 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCAT 115802 | ||| || ||||||||||| | ||| ||||| || || ||| || ||| | || Sbjct 166800 TTCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGATCCAT-TG--TTGGCAAT 166856 Query 115803 GAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTG 115859 ||| | |||||| || | ||||| | || ||| | ||||| | | ||| Sbjct 166857 GAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCAAATCCTTGAGCATGTG 166916 Query 115860 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTA 115919 ||| |||| || ||||| | ||| |||| ||||| |||| ||||| Sbjct 166917 TGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAGATATTGGATGTGTA 166976 Query 115920 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGC 115979 |||||||| | || ||||| || | ||||| || ||||| || || ||||| ||||| Sbjct 166977 TGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCAGTTGGCATCGGTGC 167036 Query 115980 CATGAGAAGGCTGTTGCGGA 115999 ||| ||||| |||||||||| Sbjct 167037 CATTAGAAGACTGTTGCGGA 167056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613481854483800