Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq17 152 8e-32 seq202 116 6e-21 >seq17 Length=1338299 Score = 152 bits (168), Expect = 8e-32 Identities = 333/495 (67%), Gaps = 8/495 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||| || || ||||| |||| ||||| || || ||| | | | || |||||||| || Sbjct 166572 CTTATCGACAGTGAATTGAACAGCGTTGACAGCTGGCTTAGTACGCAAGTAGTACATTCC 166631 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG-- 203956 ||||| || ||||||| ||| ||||| | |||||| || | | | | ||| | Sbjct 166632 AGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGA---TACCGGCGTAGCT 166688 Query 203957 -GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGC 204015 || | ||||||||||||||| || || || ||| |||||||| | | ||||| || Sbjct 166689 TGGTTTGGCCATGTGAATGTTGAGTGATTGAGATTGATCGATGAATGCTCCACGATCAGC 166748 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 ||||| | |||||| |||||| || |||||||| || || | | | || || | Sbjct 166749 AGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCATACTGTGCGGTAGAGTTCCTTGAT 166808 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 || | || | || | | || || || || || |||| ||| || ||||| || Sbjct 166809 GTCATCTGGGA-TTCCTGGGATGTTTTGAATGGATCCATTGTTGGCAATGAGTCTGTTCT 166867 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || |||| || ||||| || | || || ||| | || ||| || || | | Sbjct 166868 TCATCTCATCGGACCACAATCCTCTCTCGACCAAATCCTTGAGCATGTGTGGATTCACAA 166927 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 |||| ||||| ||||| ||||| | ||||| | | | ||| ||| |||| || | | Sbjct 166928 TCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAGATATTGGATGTGTATGGCTCAATAG 166987 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 |||||||| || | ||| ||||||||| || || ||||| || |||| || || Sbjct 166988 ATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCAGTTGGCATCGGTGCCATTAGAAGAC 167047 Query 204315 AGTTGCGCACACCGT 204329 |||||| || |||| Sbjct 167048 TGTTGCGGACTCCGT 167062 >seq202 Length=205773 Score = 116 bits (128), Expect = 6e-21 Identities = 311/469 (66%), Gaps = 6/469 (1%) Strand=Plus/Minus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 ||||| || ||||| |||| ||||| || || ||| | | || ||||||||| || Sbjct 120732 TTGTCGACTGTGAATTGAACAGCGTTGACAGCGGGCTTAGAACGCAAATAGTACATTCCA 120673 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAG--ACAGTTTGCTCACGTTGG 203957 ||||| | ||||| | ||| |||| | || ||| || | ||| | || | | ||| Sbjct 120672 GTCTTAACTCCCTTTTTCCATCCGTGAAAGTACATTGAGGTGACACTG-GCGTA-GCTGG 120615 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | | |||||||||||||| || || || ||| || ||||| | | ||||| |||| Sbjct 120614 GTTTTGCCATGTGAATGTTTAGCGATTGAGATTGATCAATGAATGCTCCACGATCAGCGG 120555 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||| | ||| | |||||| || |||||||| || || | | | || || ||| Sbjct 120554 CCATCTCGATGGTTTCCTTCTGTGATATCTCCCATACGGTGCGGTAGAAATCCTTGATGT 120495 Query 204078 GTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 | ||| | || | | | || || || || ||||||| || || ||| | || || Sbjct 120494 CGTCAGG-AATTCCTGCGAAGTTTTGAATAGATCCGTTGTTAGCGATGAGTGTGTTCTTC 120436 Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 |||| | ||||| || | |||| ||| | || ||| || || | ||| Sbjct 120435 ATCTCATTGGACCACAATCCTCTCTCAATCAAATCCTTGAGCATGTGTGGATTCACAATC 120376 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || ||||| ||||| ||||| | || | | | | || ||| |||| || | | | Sbjct 120375 TGGAAGTCGCCGGAGAGCACGCGCCGAGAGTAGATATTCGATGTGTATGGCTCTATAGAC 120316 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCA 204305 |||||||| || | ||| ||||||||| || || ||||| || |||| Sbjct 120315 TCGTTGTTACCAAGAATTTGAGCGGTGGAAGCAGTTGGCATCGGCGCCA 120267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795122350150800