Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq19 145 2e-29 seq157 129 1e-24 seq156 129 1e-24 seq24 118 2e-21 >seq19 Length=917137 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||||||||||||||| | ||||||||||| ||| || | |||||| |||| |||| Sbjct 766061 TGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCCTCCAACTGC 766120 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||||||||||||||| | |||||| || || ||||| || || |||||||| Sbjct 766121 TTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTG 766180 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || || ||||| ||||| | | ||| || || | ||||| ||||| || ||| Sbjct 766181 GCTTTGACATTTTCGATTGTGTCGGAAGCTTCGACTTCAAGTGTGATAGTCTTTCCGGTG 766240 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || Sbjct 766241 AGAGTCTTGACAAAGATCTG 766260 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||| |||||||| |||| ||||||||||| || ||||| |||||| Sbjct 766508 AGAACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTCCGTCCATCC 766567 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||||||||||||||| || ||||| || |||||| || ||| Sbjct 766568 TCGAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCCTCCTTATCC 766627 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || |||| ||||| || Sbjct 766628 TGGATCTTGGCCTTGACATTCTCGATGGTGTCGGAAGCCTCCACCTCCAGGGTGATGGTT 766687 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||| || || ||||| Sbjct 766688 TTTCCAGTCAACGTTTTGACGAAGATTTG 766716 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || ||||| ||||||||||| |||| ||| ||||| | ||| || Sbjct 763830 CGAAGACGGAGAACGAGATGGAGGGTCGACTCCTTCTGGATGTTATAGTCGGACAAGGTG 763889 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||||||||||||||| | |||||| || || || ||||| Sbjct 763890 CGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCC 763949 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| |||| |||||| | | ||| || ||||| Sbjct 763950 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCCAAG 764009 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || ||||| || || || Sbjct 764010 GTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTG 764047 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||||||||||||||| |||| ||||||||| | | ||| |||||||| Sbjct 764348 AGGACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCC 764407 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||| |||||||||||||| ||||| || || ||||| || || Sbjct 764408 TCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGGATTCCCTCCTTGTCT 764467 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| ||| | |||||| | | || || || | ||||| ||| Sbjct 764468 TGAATCTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACTTCGAGGGTGATGGTC 764527 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 764528 TTTCCAGTCAAGGTCTTGACGAAGATCTG 764556 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || ||||| ||||||||||||| ||||| || | | ||| Sbjct 765534 CGAAGACGGAGCACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAAAGAGTT 765593 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| |||| |||||||| |||||||||||||| ||||| || || |||||| Sbjct 765594 CTTCCATCCTCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATTCCC 765653 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||| ||| ||| | |||||| | | ||| || ||||| Sbjct 765654 TCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAG 765713 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || || || Sbjct 765714 GTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTG 765751 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||| ||||| | ||| || | ||||| Sbjct 764804 AGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCGGCCATCC 764863 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||||||||| | |||||| || || || ||||| || || Sbjct 764864 TCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCT 764923 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | ||| || ||||| ||||| ||| Sbjct 764924 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTC 764983 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || Sbjct 764984 TTTCCGGTGAGGGTCTTCACGAAGATCTG 765012 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||||||||||||||| | |||||| || | ||| || | ||||| Sbjct 766280 AGGACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGACAAGGTGCGGCCATCC 766339 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| ||||||||||||||||| | |||||||| || |||||||| || Sbjct 766340 TCGAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 766399 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || |||| |||||| | | || || || | ||||| ||| Sbjct 766400 TGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAAGCCTCGACTTCAAGTGTGATAGTC 766459 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || ||||| || || Sbjct 766460 TTTCCGGTGAGAGTCTTGACAAAGATCTG 766488 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || || || |||||||||| |||||| || | | ||| | ||||| Sbjct 764576 AGGACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 764635 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||||||||||||||| | |||||||| || |||||||| || Sbjct 764636 TCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 764695 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| ||| | |||||| | | ||| || ||||| ||||| ||| Sbjct 764696 TGGATCTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTC 764755 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || || || || || Sbjct 764756 TTTCCGGTCAAAGTCTTGACGAAGATCTG 764784 Score = 93.3 bits (102), Expect = 1e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||||||||||||| | || |||||| ||||| || | || |||||| ||||| Sbjct 766593 CTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGGACTCTGTCTGACTACAACATCCAG 766534 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 || |||||||||||||| || ||| Sbjct 766533 AAGGAGTCTACTCTTCATCTCGTT 766510 >seq157 Length=243809 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||||||||||||||||||||||| ||||||||| | | ||| | |||||| Sbjct 218198 AGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCC 218139 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||||||||| || | ||||| || || ||||||||| || Sbjct 218138 TCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCT 218079 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||| || | | || || || | || || ||| Sbjct 218078 TGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTC 218019 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| ||||| || || || ||||| Sbjct 218018 TTACCCGTCAGAGTCTTGACGAAGATTTG 217990 >seq156 Length=445966 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||||||||||||||||||||||| ||||||||| | | ||| | |||||| Sbjct 424349 AGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCC 424408 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||||||||| || | ||||| || || ||||||||| || Sbjct 424409 TCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCT 424468 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||| || | | || || || | || || ||| Sbjct 424469 TGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTC 424528 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| ||||| || || || ||||| Sbjct 424529 TTACCCGTCAGAGTCTTGACGAAGATTTG 424557 >seq24 Length=791117 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| ||||| || |||||||| | ||| ||||| | | || Sbjct 463816 CGAAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTG 463875 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||||||||||||||||| | |||||||| || |||||| Sbjct 463876 CGACCATCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCT 463935 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | ||| || | | | | || || | Sbjct 463936 TCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACTTCGAGA 463995 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || |||||||| || || ||||| || Sbjct 463996 GTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTG 464033 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || || |||||||| | ||| ||||| | | || | ||||| Sbjct 463196 AGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCC 463255 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||||||||||||||| | |||||||| || |||||||| ||| Sbjct 463256 TCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCC 463315 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| || | ||| || | | | | || || | ||||| ||| Sbjct 463316 TGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACTTCGAGAGTGATAGTC 463375 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || ||||| || Sbjct 463376 TTTCCAGTGAGAGTCTTGACGAAAATCTG 463404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178871678196435