Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 150 2e-31 seq19 125 7e-24 seq157 114 1e-20 seq156 114 1e-20 >seq7 Length=1891389 Score = 150 bits (166), Expect = 2e-31 Identities = 230/325 (71%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 132924 CCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCA 132983 ||| || || || ||||| | |||||| || ||||| || ||||| || || ||||| Sbjct 174518 CCTCGAGATCAGCTCGTTTGAGTGAGTCAATCCTGGCATAAGTCCGCGCTTCTTAAGCCA 174577 Query 132984 AAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAG 133043 || || | |||||| || ||||||| ||| |||||||| |||||||| | || Sbjct 174578 GAAGATCGAGGCGAACGATCCACTGAAGAAGATGCCTTCGACGGCGGCGAAAGCGATGAG 174637 Query 133044 GCGCTCGCCGAACGTGGCTTCTTTGCTG-GCGATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 |||||| |||||| ||| | | || | | ||||| || ||||| |||||||| | Sbjct 174638 ACGCTCGGCGAACGAGGCCT-TCTGATCCGAAATCCACTTGAGAGCCCAGTCGGCCTTCT 174696 Query 133103 CTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC 133162 |||| | | | | ||||||||| ||||| || |||||| | | || Sbjct 174697 TCTTGATGAATTCAAACTCGAAGATGGCGTTAAACAACTTATGTCTCTCTTGCTCGTCAC 174756 Query 133163 GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTT 133222 | | |||||| || ||||| |||||||||| |||||||| | ||||| |||||||||| Sbjct 174757 GAATGTAGGTCTCAATGAGCTTCGAATACATCTCCGAGTGGATATTCTCGATGGCGATTT 174816 Query 133223 GAAAGCCGTAAAAGCACCGCGCCTC 133247 | || ||||| ||| | || ||||| Sbjct 174817 GGAATCCGTAGAAGAAACGGGCCTC 174841 >seq19 Length=917137 Score = 125 bits (138), Expect = 7e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || ||||||||| | || ||||| ||| | Sbjct 765755 AATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCTTGGAAGTCGAAGCCTC 765696 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | ||||| | || | ||||||| ||||| ||||||||||| | || | Sbjct 765695 CGACACCATTGAAAACG-TCAAGGCTAAAATCCAAGACAAGGAGGGAATTCCACCAGATC 765637 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || ||||| | ||| || || || |||| || | | || || || |||| Sbjct 765636 AGCAACGTCTCATCTTCGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCGGATTACA 765577 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | ||||||||||| | || || ||||||||||| ||| Sbjct 765576 ATATCCAAAAGGAGTCCACTCTTCATTTGGTGCTCCGT 765539 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| |||||| | || || |||||||||||| | || || ||||| || Sbjct 766719 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGGCTTCC 766660 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || || ||||||||||| | |||||| Sbjct 766659 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCACCAGACCAA 766600 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| || || ||||| || || | || || || ||||||||| Sbjct 766599 CAACGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGGACTCTGTCTGACTACAAC 766540 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || ||| | || || ||| Sbjct 766539 ATCCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGT 766504 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || ||||||||| | || ||||| ||| || Sbjct 764787 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 764728 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || |||| ||||| || ||||| || | ||||| Sbjct 764727 GACACCATTGAAAACG-TCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGACCA 764669 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | ||||| | ||| || || || |||| || | ||||| ||| ||| ||||| Sbjct 764668 GCAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGCCGCACTCTCTCCGATTACAA 764609 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || ||| | || || ||| Sbjct 764608 CATCCAAAAGGAATCCACCCTTCATCTCGTCCTCCGT 764572 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || ||||| || || || ||||| | || ||||| || | Sbjct 766264 AATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAAGCTTC 766205 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | ||| | |||| || || | ||||| |||||||| || | || || Sbjct 766204 CGACACAATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCA 766145 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | ||| || || ||| |||| || | ||||| | |||||||| Sbjct 766144 GCAGAGACTCATCTTCGCCGGAAAGCAGTTGGAGGATGGACGCACATTGTCTGACTACAA 766085 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| |||||||| |||| || ||||||||||| ||| | ||||| || Sbjct 766084 CATTCAAAAGGAGTCGACTCTCCATTTGGTGCTCCGTCTCAGAGGAGG 766037 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || ||||||||| |||| || ||||| || Sbjct 764559 ATGCAGATCTTCGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTTGAGGCTTCC 764500 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || || | ||||| |||||||| || | || || Sbjct 764499 GACACCATTGAAAACG-TGAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCA 764441 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| || || || |||| || | | || || |||||||| Sbjct 764440 GCAACGTCTCATCTTCGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCGGACTACAA 764381 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| |||| || || ||||| || || Sbjct 764380 CATCCAGAAGGAGTCGACTCTCCACTTGGTCCTTCG 764345 >seq157 Length=243809 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || ||||| || || || ||| |||| ||||||||| || Sbjct 217987 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCC 218046 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| || |||||||| | || || Sbjct 218047 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 218106 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | || || | ||| || || || || || || | || || ||| |||||||||| Sbjct 218107 CAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 218166 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| |||| || || ||||| || ||| Sbjct 218167 ATCCAAAAGGAGTCGACTCTCCACTTGGTTCTCCGT 218202 >seq156 Length=445966 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || ||||| || || || ||| |||| ||||||||| || Sbjct 424560 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCC 424501 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| || |||||||| | || || Sbjct 424500 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 424441 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | || || | ||| || || || || || || | || || ||| |||||||||| Sbjct 424440 CAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 424381 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| |||| || || ||||| || ||| Sbjct 424380 ATCCAAAAGGAGTCGACTCTCCACTTGGTTCTCCGT 424345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500152136611200