Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq17 122 1e-22 >seq17 Length=1338299 Score = 122 bits (134), Expect = 1e-22 Identities = 302/456 (66%), Gaps = 7/456 (2%) Strand=Plus/Minus Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 ||||| | ||||| || || || |||||| | || | | | |||||||| ||| Sbjct 167621 ATCAAATGCTCCAATCTGTGCACGGAAATCATCGAGTACTCTGCTCCAGATGAGATCGCT 167562 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 112496 || || || || || || ||||||||| | | ||| ||| |||| |||| ||| Sbjct 167561 GTCTGCAATCTTGCTTCTATCGCTCTCAACCGATTTGTCACTCCTGAGA---AGACGTTT 167505 Query 112497 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATT 112556 |||| | || || || ||||| ||| | || ||||| || |||| | || Sbjct 167504 GATTTCAAGAAGCTTGCTGAGGTTACCAAAGTGATAACGAAAAATCTGAACAAGATCATC 167445 Query 112557 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 ||| |||| |||||| ||||| || ||||| || || ||| | || ||||||||| Sbjct 167444 GATGTCAATTATTACCCAGTTGAAGAAGCACGTAACTCGAACATGCGTCATCGTCCAATT 167385 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCA--CGCATTTGATT 112674 || || || || ||||| ||||| ||| ||||| ||| | | | |||| || Sbjct 167384 GGACTTGGAGTTCAAGGACTCGCTGATTGTTTCAT--GTTGATGAGATTCCCATTCACTT 167327 Query 112675 CCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTG 112734 | || | ||| | || | || ||| || || || ||||| || | || ||||| | Sbjct 167326 CAGAAGGAGCCAGAGATTTGAACAAGCGCATCTTCGAAACAATCTACTATGCTGCTCTCG 167267 Query 112735 AGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 112794 | || |||| || ||||| ||| ||||| ||||| || | | | || || || | Sbjct 167266 AAGCCAGTTGCGAATTGGCTGAGAAAGATGGACCATACTCTACTTATCAAGGATCACCTG 167207 Query 112795 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAG 112830 ||| ||||| || |||||||| ||||||| || Sbjct 167206 TCTCAAAAGGGCAACTCCAATTTGACATGTGGGGAG 167171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620716755579600