Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq17 114 2e-20 seq202 111 2e-19 >seq17 Length=1338299 Score = 114 bits (126), Expect = 2e-20 Identities = 238/347 (69%), Gaps = 8/347 (2%) Strand=Plus/Plus Query 110097 AAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCG 110156 ||||| ||| || || || ||||| || || ||||| || ||||| |||||| ||| Sbjct 167353 AAACA-ATCAGCGAGTCCTTGAACTCCAAGTCCAATTGGACGATGACGCATGTTCGAGTT 167411 Query 110157 TCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCA- 110215 || || ||| || |||||| | ||| ||||||| | || ||||| ||||| | Sbjct 167412 ACGTGCTTCTTCAACTGGGTAATAATTGACATCGATGATCTTGTTCAGATTTTTCGTTAT 167471 Query 110216 CAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACAT 110275 || | || || | ||| || || | | |||| ||||| ||| || | ||||| Sbjct 167472 CACT-TTGGTAACCTCAGCAAGCTTCTTGAAATCAAACGTCTTC---TCAGGAGTGACAA 167527 Query 110276 ATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATT 110335 || | |||||| ||||| ||||||||||| |||| |||| ||| | | ||| | Sbjct 167528 ATCGGTTGAGAGCGATAGAAGCAAGATTGCAGACAGCGATCTCATCTGGAGCAGAGTACT 167587 Query 110336 CCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATT 110395 | | |||||||| |||| ||||| | || ||| || | ||| | ||||| || | Sbjct 167588 CGATGATTTCCGTGCACAGATTGGAGCATTTGATGGTTCCGAGGTTTTGTTGATTGGACT 167647 Query 110396 TG-GAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTC 110441 || || | ||| |||||||| ||| |||||||| |||||||| Sbjct 167648 TGCGATTGGCA-GCATCCTTGTAGGTGATGTATGGAAGTCCAGTTTC 167693 Score = 104 bits (114), Expect = 3e-17 Identities = 287/439 (65%), Gaps = 6/439 (1%) Strand=Plus/Plus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || || ||||| || ||||||| |||| | |||||||| | || | Sbjct 166621 TAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATACCG 166680 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | | || | |||| | ||| | || ||||| |||||||||||| ||| Sbjct 166681 GCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGATTGATCGATGAATGCTCCA 166740 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 |||||||| ||||| ||||| || ||| || || ||||| || || ||| | Sbjct 166741 CGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCCATACTGTGCGGTAGAGT 166800 Query 109594 TTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATG 109653 | |||||| ||||| || || | |||||||||||| || ||| || | ||| Sbjct 166801 TCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGATCCATTG---TTGGCAATG 166857 Query 109654 AGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGC 109710 || | ||||||||| | ||||| | || || | ||| | | | || Sbjct 166858 AGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCAAATCCTTGAGCATGTGT 166917 Query 109711 TTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAG 109770 || || | || ||||| | || |||||| |||||| || | ||||| Sbjct 166918 GGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAGATATTGGATGTGTAT 166977 Query 109771 GGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCC 109830 || || | | | || ||||| || || ||||| || |||||||| || ||||| || ||| Sbjct 166978 GGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCAGTTGGCATCGGTGCC 167037 Query 109831 ATGAGAAGACTGTTTCGGA 109849 || ||||||||||| |||| Sbjct 167038 ATTAGAAGACTGTTGCGGA 167056 >seq202 Length=205773 Score = 111 bits (122), Expect = 2e-19 Identities = 237/353 (67%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||| | ||| ||||| ||||| |||||| ||||||||||| ||||| |||||| | Sbjct 120598 GTTTAGCGATTGAGATTGATCAATGAATGCTCCACGATCAGCGGCCATCTCGATGGTTTC 120539 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 ||| || || ||||| || || ||| |||| |||||| || || ||||| | | Sbjct 120538 CTTCTGTGATATCTCCCATACGGTGCGGTAGAAATCCTTGATGTCGTCAGGAATTCCTGC 120479 Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGAG---ATCCTTCATCTCTTTCGACCA 109676 || |||||||||||| || || | ||||| | ||||||||| || ||||| Sbjct 120478 GAAGTTTTGAATAGA---TCCGTTGTTAGCGATGAGTGTGTTCTTCATCTCATTGGACCA 120422 Query 109677 GAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGC 109736 | || || | | ||| | | | || || || | || || || | Sbjct 120421 CAATCCTCTCTCAATCAAATCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCGCCGGA 120362 Query 109737 AAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAG 109796 || ||| || |||||| || | ||||| || || | | |||| ||||| || || Sbjct 120361 GAGCACGCGCCGAGAGTAGATATTCGATGTGTATGGCTCTATAGACTCGTTGTTACCAAG 120302 Query 109797 GATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 ||||| || |||||||| || ||||| || ||||| |||||||||| |||| Sbjct 120301 AATTTGAGCGGTGGAAGCAGTTGGCATCGGCGCCATTCGAAGACTGTTACGGA 120249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588951667929000