Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq17 127 2e-24 seq486 82.4 9e-11 >seq17 Length=1338299 Score = 127 bits (140), Expect = 2e-24 Identities = 303/454 (67%), Gaps = 8/454 (2%) Strand=Plus/Plus Query 105580 TGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATG 105639 || ||||| || | |||||||| || ||||||||||| | ||||| |||| | || Sbjct 166605 TGGCTTAGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTG 166664 Query 105640 CATAGAAGAGAGCTTGGACATCG-TTGGACTTTCCATGAAAAGATTCATACTTTGACTCT 105698 ||| || | || || | | | |||| | ||||| || || | |||| | Sbjct 166665 CATTGAGGTGATACCGG-CGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGATT 166723 Query 105699 GGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCC 105758 | || ||||| ||||| | || ||||| || || | |||||| ||| |||| Sbjct 166724 GATCGATGAATGCTCCACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCCC 166783 Query 105759 ACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAAC 105818 | |||||||||||||| | |||||| ||||||||||| ||| ||| |||||||| || Sbjct 166784 ATACTGTGCGGTAGAGTTCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGA-- 166841 Query 105819 CCCCCGCCTTGACCATGAG---ATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGA 105875 || ||| | ||||| | |||||| || | |||||| | || ||| | Sbjct 166842 -TCCATTGTTGGCAATGAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCA 166900 Query 105876 GATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGAT 105935 ||| |||| | || || |||||| || || || | ||| | || | Sbjct 166901 AATCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGT 166960 Query 105936 AGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGG 105995 |||| || | ||||| || |||| |||| || || || | ||||| |||||||| | Sbjct 166961 AGATATTGGATGTGTATGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAG 167020 Query 105996 CTGTTGGCATTGGTGCCATCAAAAGACTGTTACG 106029 | |||||||| |||||||| | ||||||||| || Sbjct 167021 CAGTTGGCATCGGTGCCATTAGAAGACTGTTGCG 167054 Score = 96.9 bits (106), Expect = 4e-15 Identities = 288/441 (65%), Gaps = 5/441 (1%) Strand=Plus/Plus Query 106166 TCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 106225 ||||||||||| || || || || || | || | || || ||||| ||||| || Sbjct 167245 TCAGCCAATTCGCAACTGGCTTCGAGAGCAGCATAGTAGATTGTTTCGAAGATGCGCTTG 167304 Query 106226 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCG 106285 |||| || ||||| | |||||| |||| | | | ||| || || ||| ||| Sbjct 167305 TTCAAATCTCTGGCTCCTTCTGAAGTGAATGGGAATCTCATCAACATGAAACAATCAGCG 167364 Query 106286 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 106345 || |||||||| || | ||||| || | || ||||| || || || || || ||| Sbjct 167365 AGTCCTTGAACTCCAAGTCCAATTGGACGATGACGCATGTTCGAGTTACGTGCTTCTTCA 167424 Query 106346 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 106405 || || ||| |||| || |||| ||| |||||||| || | | || || | Sbjct 167425 ACTGGGTAATAATTGACATCGATGATCTTGTTCAGATTTTTCGTTATCACTTTGGTAACC 167484 Query 106406 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATA-CTTTGGAAGGGC 106464 ||| ||| || | ||||||| || |||| | ||||| | | | | || || Sbjct 167485 TCAGCAAGCTTCTTGAAATCAAACGT---CTTCTCAGGAGTGACAAATCGGTTG-AGAGC 167540 Query 106465 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 106524 ||| || || | |||||| ||||| ||||||| | | | |||||| | ||||| || Sbjct 167541 GATAGAAGCAAGATTGCAGACAGCGATCTCATCTGGAGCAGAGTACTCGATGATTTCCGT 167600 Query 106525 ACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGC 106584 |||| ||||| | || || || || | || | ||| || ||| ||| || Sbjct 167601 GCACAGATTGGAGCATTTGATGGTTCCGAGGTTTTGTTGATTGGACTTGCGATTGGCAGC 167660 Query 106585 ATCCTTGTAGAGCATGTAGGG 106605 |||||||||| ||||| || Sbjct 167661 ATCCTTGTAGGTGATGTATGG 167681 >seq486 Length=71490 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 9364 TTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTT 9423 |||| || |||||||| ||||||||||| | |||||||||| ||| | | ||| || Sbjct 49029 TTCCTACAGCATCAATTTCATCAATGAACAAAATACATGGTGAATTCTTCCTGGCCATGG 49088 Query 9424 CAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9483 ||| | ||| ||||| ||| | || || ||||||||||| || | ||| | || Sbjct 49089 AAAACATATCACGAACTCTTGCTGGTCCGACTCCAACAAACATTTCGAGAAATTCTGATC 49148 Query 9484 CGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9542 | || ||| | ||||| || ||||| | ||| || || | || || ||||| || Sbjct 49149 CAGAGACAGT-AATGAATGGTACATTTGCTTCTCCTGCTGTTGCCTTAGCTAGAAGTGTT 49207 Query 9543 TTACCCGTACCTGG 9556 || ||||| || || Sbjct 49208 TTTCCCGTTCCCGG 49221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589956426418200