Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq41 127 2e-24 seq381 118 1e-21 >seq41 Length=1292958 Score = 127 bits (140), Expect = 2e-24 Identities = 262/387 (68%), Gaps = 2/387 (1%) Strand=Plus/Plus Query 154719 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATG 154778 |||||||| ||| ||||| || ||||| ||||| || |||| |||||| ||| Sbjct 756449 TGTTTGATTCCAACATCAGCTCACGGAACCAATCCAGCATCTGCTCAAATGGCAAACATG 756508 Query 154779 AAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAG-AGAA 154837 ||||| || | || | | ||| || | ||||| || | ||||||| | | || | Sbjct 756509 AAAGTCGTCGTCGTGGATTCAGATCATCACGGTAATATCAATTACAAAGATTTGGCAGCA 756568 Query 154838 GAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACA 154897 | | | | | | || | || || | ||| ||| | ||||| |||||||| || Sbjct 756569 AAGGCCGAAAAGTACTCCAATC-AATTGGCGGCTATCATGGTCACATATCCATCTACTCA 756627 Query 154898 TGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCA 154957 ||| || ||||| | ||| | | | ||| | | |||||||| |||| || || Sbjct 756628 TGGAGTTTTTGAGTCATCGATTCGTGATGTCTGTGATAAGGTTCATGAGCATGGAGGACA 756687 Query 154958 GGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTA 155017 || ||| | |||||||| ||| | ||||| || || ||| | ||| | || || Sbjct 756688 AGTTTATTTGGATGGAGCGAATATGAATGCTCAAGTTGGATTGTGTCGTCCAGGAGATTA 756747 Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| ||||| | |||||| ||||| || || ||||||||||||||||||||||| || Sbjct 756748 CGGTAGTGATGTCTCTCATCTGAACTTGCACAAGACATTCTGTATTCCACATGGAGGAGG 756807 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| || || || || || || || Sbjct 756808 TGGTCCAGGTGTTGGACCAATTGGAGT 756834 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 153903 TTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGC 153962 || || || ||||| | || |||||||| | | |||||||| || |||||||||||| Sbjct 755372 TTGGCTCTTCAGACCCGTGAACAGCATATTCGTCGTGACAAAGCCACGAGTAACATCTGC 755431 Query 153963 ACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGG 154015 || |||||||| || || || |||||||||| | ||||||| ||||| || Sbjct 755432 ACTGCTCAGGCTCTTCTTGCCAATATGTCTGCTATGTATGCAGTTTATCACGG 755484 >seq381 Length=149086 Score = 118 bits (130), Expect = 1e-21 Identities = 260/387 (67%), Gaps = 2/387 (1%) Strand=Plus/Minus Query 154719 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATG 154778 |||||||| ||| ||||| || ||||| ||||| || |||| |||||| ||| Sbjct 6165 TGTTTGATTCCAACATCAGCTCACGGAACCAATCCAGCATCTGCTCAAATGGCAAACATG 6106 Query 154779 AAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAG-AGAA 154837 ||||| || | || | | ||| || ||||||| || | ||||||| | | || | Sbjct 6105 AAAGTCGTCGTCGTGGATTCAGATCATCATGGTAATATCAATTACAAAGATTTGGCAGCA 6046 Query 154838 GAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACA 154897 | | | | | | || | || || | ||| ||| | ||||| || || || || Sbjct 6045 AAGGCCGAAAAGTACTCCAATC-AATTGGCGGCTATCATGGTCACATATCCCTCGACTCA 5987 Query 154898 TGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCA 154957 ||| || ||||| | ||| | | | ||| | | |||||||| |||| || || Sbjct 5986 TGGAGTTTTTGAGTCATCGATTCGTGATGTCTGTGATAAGGTTCATGAGCATGGAGGACA 5927 Query 154958 GGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTA 155017 || ||| | |||||||| ||| | ||||| || || ||| | ||| | || || Sbjct 5926 AGTTTATTTGGATGGAGCTAATATGAATGCTCAAGTTGGATTGTGTCGTCCAGGGGATTA 5867 Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| ||||| | |||| | ||||| || || ||||||||||||||||||||||| || Sbjct 5866 CGGTAGTGATGTCTCTCATTTGAACTTGCACAAGACATTCTGTATTCCACATGGAGGAGG 5807 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| || || || || || || || Sbjct 5806 TGGTCCAGGTGTTGGACCAATTGGAGT 5780 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 153903 TTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGC 153962 || || || ||||| | || |||||||| | | ||||||||||| |||||||||||| Sbjct 7249 TTGGCTCTTCAGACCCGTGAACAGCATATTCGTCGTGACAAAGCAACAAGTAACATCTGC 7190 Query 153963 ACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGG 154015 || || ||||| ||||| || |||||||||| | ||||||| |||||||| Sbjct 7189 ACTGCCCAGGCTCTGCTTGCCAATATGTCTGCTATGTATGCAGTTTATCATGG 7137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579188871271200