Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq41 136 5e-27 seq381 127 2e-24 >seq41 Length=1292958 Score = 136 bits (150), Expect = 5e-27 Identities = 264/387 (68%), Gaps = 2/387 (1%) Strand=Plus/Plus Query 159394 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATG 159453 |||||||| ||| ||||| || ||||| ||||| ||||| || |||||| ||| Sbjct 756449 TGTTTGATTCCAACATCAGCTCACGGAACCAATCCAGCATCTGCTCAAATGGCAAACATG 756508 Query 159454 AAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAG-AGAA 159512 ||||| || | || | | ||| || | || || || | ||||||| | | || | Sbjct 756509 AAAGTCGTCGTCGTGGATTCAGATCATCACGGTAATATCAATTACAAAGATTTGGCAGCA 756568 Query 159513 GAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACA 159572 | | | | | | || | || || | ||| ||| | |||||||||||||| || Sbjct 756569 AAGGCCGAAAAGTACTCCAATC-AATTGGCGGCTATCATGGTCACATATCCATCTACTCA 756627 Query 159573 TGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCA 159632 ||| || ||||| || || | | | ||| | | ||||||||| |||| || || Sbjct 756628 TGGAGTTTTTGAGTCATCGATTCGTGATGTCTGTGATAAGGTTCATGAGCATGGAGGACA 756687 Query 159633 GGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTA 159692 || ||| | ||||| || ||| | ||||| || || || | ||| | || || Sbjct 756688 AGTTTATTTGGATGGAGCGAATATGAATGCTCAAGTTGGATTGTGTCGTCCAGGAGATTA 756747 Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| ||||| | |||||| ||||| || |||||||||||||||||||||||||| || Sbjct 756748 CGGTAGTGATGTCTCTCATCTGAACTTGCACAAGACATTCTGTATTCCACATGGAGGAGG 756807 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| || || || || ||||| || Sbjct 756808 TGGTCCAGGTGTTGGACCAATTGGAGT 756834 >seq381 Length=149086 Score = 127 bits (140), Expect = 2e-24 Identities = 262/387 (68%), Gaps = 2/387 (1%) Strand=Plus/Minus Query 159394 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATG 159453 |||||||| ||| ||||| || ||||| ||||| ||||| || |||||| ||| Sbjct 6165 TGTTTGATTCCAACATCAGCTCACGGAACCAATCCAGCATCTGCTCAAATGGCAAACATG 6106 Query 159454 AAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAG-AGAA 159512 ||||| || | || | | ||| || |||| || || | ||||||| | | || | Sbjct 6105 AAAGTCGTCGTCGTGGATTCAGATCATCATGGTAATATCAATTACAAAGATTTGGCAGCA 6046 Query 159513 GAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACA 159572 | | | | | | || | || || | ||| ||| | |||||||| || || || Sbjct 6045 AAGGCCGAAAAGTACTCCAATC-AATTGGCGGCTATCATGGTCACATATCCCTCGACTCA 5987 Query 159573 TGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCA 159632 ||| || ||||| || || | | | ||| | | ||||||||| |||| || || Sbjct 5986 TGGAGTTTTTGAGTCATCGATTCGTGATGTCTGTGATAAGGTTCATGAGCATGGAGGACA 5927 Query 159633 GGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTA 159692 || ||| | ||||| || ||| | ||||| || || || | ||| | || || Sbjct 5926 AGTTTATTTGGATGGAGCTAATATGAATGCTCAAGTTGGATTGTGTCGTCCAGGGGATTA 5867 Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| ||||| | |||| | ||||| || |||||||||||||||||||||||||| || Sbjct 5866 CGGTAGTGATGTCTCTCATTTGAACTTGCACAAGACATTCTGTATTCCACATGGAGGAGG 5807 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| || || || || ||||| || Sbjct 5806 TGGTCCAGGTGTTGGACCAATTGGAGT 5780 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 158578 TTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGC 158637 || || || ||||| | || |||||||| | | ||||||||||| |||||||||||| Sbjct 7249 TTGGCTCTTCAGACCCGTGAACAGCATATTCGTCGTGACAAAGCAACAAGTAACATCTGC 7190 Query 158638 ACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGG 158690 || || || || ||||| || |||||||||| | ||||||| |||||||| Sbjct 7189 ACTGCCCAGGCTCTGCTTGCCAATATGTCTGCTATGTATGCAGTTTATCATGG 7137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588026906134800