Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq19 174 3e-38 seq24 129 1e-24 seq38 89.7 1e-12 >seq19 Length=917137 Score = 174 bits (192), Expect = 3e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||||||||| ||||| ||||||||||| | ||||||||| ||||| || | ||| Sbjct 765552 TGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAAAGAGTTCTTCCATCCTCCAATTGC 765611 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| || ||||| || ||||| ||||| || || |||||||| ||||| Sbjct 765612 TTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATTCCCTCCTTGTCTTGGATTTTA 765671 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| ||||||||||| || ||| ||||| | ||| | |||||||| || Sbjct 765672 GCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCAGTG 765731 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | |||||| Sbjct 765732 AGGGTCTTGACGAAGATCTGCATT 765755 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || |||||||| ||||| || || || ||||| || | ||||| | ||||| || Sbjct 766510 AACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTCCGTCCATCCTC 766569 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| || |||||||||||||| ||||| || || || || || Sbjct 766570 GAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCCTCCTTATCCTG 766629 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||| ||||| |||||||| ||| ||||| || ||||| | || || Sbjct 766630 GATCTTGGCCTTGACATTCTCGATGGTGTCGGAAGCCTCCACCTCCAGGGTGATGGTTTT 766689 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| ||||| ||||| | |||||| Sbjct 766690 TCCAGTCAACGTTTTGACGAAGATTTGCAT 766719 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| ||||| || ||||| || |||||||||| ||||| | ||||| || Sbjct 764579 ACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCC 764638 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || |||||||| |||| ||| |||||||| || || ||||| |||||||| Sbjct 764639 AATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 764698 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| || ||| ||||| | ||| | |||||| Sbjct 764699 ATCTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTT 764758 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || ||||| | ||||| Sbjct 764759 CCGGTCAAAGTCTTGACGAAGATCTGCAT 764787 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| || || || ||||| || | ||||||||| ||||| || | || Sbjct 764356 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCCAATTG 764415 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || ||||| || ||||| || || || || ||||||||||| || Sbjct 764416 CTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTT 764475 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| ||||||||||| ||| || ||||| ||||| | |||||||| || Sbjct 764476 GGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACTTCGAGGGTGATGGTCTTTCCAGT 764535 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 764536 CAAGGTCTTGACGAAGATCTGCAT 764559 Score = 134 bits (148), Expect = 3e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | |||||| || ||||| || || || || || |||| |||| || | ||||| | Sbjct 764806 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGACAAG-GTGCGGCCATCCT 764864 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||||||||| || |||||||| | || ||||| ||||| || || || || ||||||| Sbjct 764865 CGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCTT 764924 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | || || |||||||||||| |||||||| || ||| ||||| | ||| | |||| Sbjct 764925 GGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCT 764984 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || | || || ||||| | ||||| Sbjct 764985 TTCCGGTGAGGGTCTTCACGAAGATCTGCAT 765015 Score = 131 bits (144), Expect = 4e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| || || || || ||||| || || || || || |||| |||| || | ||||| | Sbjct 763841 AACGAGATGGAGGGTCGACTCCTTCTGGATGTTATAGTCGGACAAG-GTGCGGCCATCCT 763899 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||||||||| || |||||||| | || ||||| ||||| || || || || ||||||| Sbjct 763900 CGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCTT 763959 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | || || |||||||||||| |||||||| || ||| ||||| | ||| | |||| Sbjct 763960 GGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCT 764019 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || | || || ||||| | ||||| Sbjct 764020 TTCCGGTGAGGGTCTTCACGAAGATCTGCAT 764050 Score = 125 bits (138), Expect = 2e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || |||||||| |||||||| ||||| || || ||||| ||||||||||| || Sbjct 765155 CTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTT 765214 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| |||||||||||||| || || ||||| | ||| | |||||||| || Sbjct 765215 GGCCTTGACATTCTCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTTTCCGGT 765274 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | ||||| Sbjct 765275 CAAAGTCTTGACGAAGATCTGCAT 765298 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| ||||| |||||||| ||||| || | | || | ||||| || | |||| Sbjct 766061 TGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCCTCCAACTGC 766120 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| |||| || || ||||| || || || || ||||||||||| || Sbjct 766121 TTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTG 766180 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || || || ||||| ||| ||| |||||||| || | |||||||| || Sbjct 766181 GCTTTGACATTTTCGATTGTGTCGGAAGCTTCGACTTCAAGTGTGATAGTCTTTCCGGTG 766240 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||| || || || | |||||| Sbjct 766241 AGAGTCTTGACAAAGATCTGCATT 766264 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || || |||||||| || || |||| || || | ||||| || | || Sbjct 765323 GTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCCTCCAATTG 765382 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || ||| |||||||| || || ||||| || || || || || Sbjct 765383 CTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTT 765442 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||||||||| || || ||| || || || || | |||||||| || Sbjct 765443 GGCCTTCACGTTCTCAATGGTATCAGAGGCTTCGACCTCGAGAGTGATAGTCTTTCCAGT 765502 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 765503 GAGAGTCTTGACGAAAATCTGCAT 765526 Score = 104 bits (114), Expect = 5e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || | || ||| |||||||| || || ||||| ||||| || || || Sbjct 765892 CTTACCGGCGAAAATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTT 765951 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||||||||| || ||| || |||||||| || | |||||||| || Sbjct 765952 GGCTTTGACGTTCTCAATGGTATCGGAAGCCTCGACTTCAAGAGTGATGGTCTTTCCGGT 766011 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | ||||||| Sbjct 766012 GAGGGTCTTCACGAAGATTTGCATT 766036 >seq24 Length=791117 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || |||||||| || || |||| || || | ||||| || | || Sbjct 463833 GTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCCTCCAATTG 463892 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| |||| ||| |||||||| || || ||||| || || || || || Sbjct 463893 CTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTT 463952 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||||||||| || || | | ||||| || || | |||||||| || Sbjct 463953 GGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACTTCGAGAGTGATAGTCTTTCCAGT 464012 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 464013 GAGAGTCTTGACGAAAATCTGCAT 464036 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || || |||||||| || || |||| || || | ||||| || | || Sbjct 463204 GTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCCTCCAATTG 463263 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| |||| ||| |||||||| || || ||||| || || || || || Sbjct 463264 CTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTT 463323 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||||||||| || || | | ||||| || || | |||||||| || Sbjct 463324 GGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACTTCGAGAGTGATAGTCTTTCCAGT 463383 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 463384 GAGAGTCTTGACGAAAATCTGCAT 463407 >seq38 Length=1321511 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 125527 CCAAAGAAACACGGCAGGGGAGGACAATCTGCTTTGCGTTTTGAGAGACTTCGAAAAGAA 125586 |||||||||||||| || |||||||| ||||| | ||||||| | || || || ||| Sbjct 899738 CCAAAGAAACACGGTAGAGGAGGACAGTCTGCAGTTCGTTTTGCTCGTCTCCGTAACGAA 899797 Query 125587 AAGAGACACAACTATTTGAGGAAAGTCGCAGAGAATGCAACT-CAATGTTTTTTGCAA-- 125643 || | ||||| ||| | | ||||| || || |||||| | |||||| | || Sbjct 899798 AAACGGCACAATTATGTACGTAAAGTTGCTGAAAATGCAGTTGAAATGTTCATCAAAAAT 899857 Query 125644 GACAACAAGTGCAAC-GTCATTGGGATTGTCATTGCTGGATCGGCAGAGTTCAAAACAAA 125702 |||| |||| ||| ||| ||| | | ||||||| || || |||||||| | Sbjct 899858 GACA--AAGT--AACTGTCGCTGGACTCATTCTTGCTGGTAGTGCTGATTTCAAAACTGA 899913 Query 125703 GCTTCTGGAATCTGACCTTTTCGACCAAAGACTTCGAACAAAA 125745 ||| | |||||||| | ||||| |||||||||| | | ||| Sbjct 899914 GCTCGGGCAATCTGACATGTTCGATCAAAGACTTCAAGCTAAA 899956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109434618654935