Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq19 118 7e-22 seq24 109 4e-19 >seq19 Length=917137 Score = 118 bits (130), Expect = 7e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||||||||| ||| | |||| ||| Sbjct 764351 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCC 764410 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || ||||| || || || || |||||||| ||| | || | ||||||||||| | Sbjct 764411 AATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 764470 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | | || | || |||||||| |||| ||| ||||| ||| Sbjct 764471 ATCTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACTTCGAGGGTGATGGTCTTT 764530 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||||| || |||||||||||| Sbjct 764531 CCAGTCAAGGTCTTGACGAAGATCTGCATA 764560 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | ||||||||||| || || ||||| ||||||||||| || Sbjct 764789 CCTCCTCTCAAGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAC 764848 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || |||| || ||||| |||||||| || || | || || || ||| | || Sbjct 764849 AAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGG 764908 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| |||||| | || | || ||| || || Sbjct 764909 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACT 764968 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| ||||| ||||| |||||||| |||||||||||| Sbjct 764969 TCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATA 765016 Score = 114 bits (126), Expect = 8e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || || |||||||| || || || | | | || |||| || Sbjct 766283 ACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGACAAGGTGCGGCCATCCTCG 766342 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||||||||| || || |||| |||||||||| | || | || |||||||| Sbjct 766343 AGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 766402 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||| || || || || | ||| ||||| || || | || || || | Sbjct 766403 ATCTTGGCTTTAAC--ATTCTCGATGGTGTCAGAAGCCTCGACTTCAAGTGTGATAGTCT 766460 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||||||||||| |||||||||||||| Sbjct 766461 TTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766491 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| || | | ||| |||| |||| ||| |||||||| || Sbjct 766073 TCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAG 766132 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||| ||| | || | ||||||||||| |||||| |||||| | Sbjct 766133 ATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGCTTTGACATTT 766192 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || || || || | || || || ||||| ||||||||||| ||| Sbjct 766193 TCGATTGTGTCGGAAGCTTCGACTTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACA 766252 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 766253 AAGATCTGCAT 766263 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| || | | | || |||| || ||||| |||||||| || Sbjct 763860 TCCTTCTGGATGTTATAGTCGGACAAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAG 763919 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || || ||| | || | ||||||||||| ||||| |||||| Sbjct 763920 ATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTC 763979 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || ||| || || || | ||| ||||| ||||| ||||| |||||||| Sbjct 763980 TCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCACG 764039 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 764040 AAGATCTGCATA 764051 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| || |||||||||||||| || ||| | || |||| ||| Sbjct 765318 ACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCCTCC 765377 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || ||||| || || || | || |||||||||| | || | || ||||| || Sbjct 765378 AATTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 765437 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | ||| ||| || || |||| || || || ||| Sbjct 765438 ATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTTCGACCTCGAGAGTGATAGTCTTT 765497 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||||||||| || || ||||||||| Sbjct 765498 CCAGTGAGAGTCTTGACGAAAATCTGCATA 765527 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| ||| || || || || || || |||||||| ||| | |||| ||| Sbjct 765546 ACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAAAGAGTTCTTCCATCCTCC 765605 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || ||||| || || || || |||||||| ||| | || | ||||||||||| Sbjct 765606 AATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATTCCCTCCTTGTCTTGG 765665 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || |||||| | | || | || ||| || || || | ||| ||||| ||| Sbjct 765666 ATTTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTT 765725 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || ||||||||||| Sbjct 765726 CCAGTGAGGGTCTTGACGAAGATCTGCAT 765754 Score = 98.7 bits (108), Expect = 6e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||| ||| || || ||||| || || || || | || |||| |||| || Sbjct 764585 TGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAATTGC 764644 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 |||||||| || || |||| |||||||||| | || | || |||||||| ||||| Sbjct 764645 TTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTA 764704 Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 |||||| | | || | || ||| || || || | ||| ||||| ||||| || Sbjct 764705 GCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGGTC 764764 Query 34959 AGAGTCTTCACAAAGATCTGCATA 34982 | |||||| || |||||||||||| Sbjct 764765 AAAGTCTTGACGAAGATCTGCATA 764788 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| || ||||| |||||||| || Sbjct 766529 TCCTTCTGGATGTTGTAGTCAGACAGAGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAAG 766588 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| |||||| | || | |||||||| || ||||| ||||| || Sbjct 766589 ATGAGACGTTGTTGGTCTGGTGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--AT 766646 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || ||||| || || | ||| ||||||||||| || | || || | Sbjct 766647 TCTCGATGGTGTCGGAAGCCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAACGTTTTGA 766706 Query 34969 CAAAGATCTGCAT 34981 | ||||| ||||| Sbjct 766707 CGAAGATTTGCAT 766719 >seq24 Length=791117 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| || |||||||||||||| || ||| | || |||| ||| Sbjct 463199 ACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCCTCC 463258 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || |||||||| || || |||| |||||||||| | || | || ||||| || Sbjct 463259 AATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 463318 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | ||| ||| | || |||| || || || ||| Sbjct 463319 ATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACTTCGAGAGTGATAGTCTTT 463378 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||||||||| || || ||||||||| Sbjct 463379 CCAGTGAGAGTCTTGACGAAAATCTGCATA 463408 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| || |||||||||||||| || ||| | || |||| ||| Sbjct 463828 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCCTCC 463887 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || |||||||| || || |||| |||||||||| | || | || ||||| || Sbjct 463888 AATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGG 463947 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | ||| ||| | || |||| || || || ||| Sbjct 463948 ATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACTTCGAGAGTGATAGTCTTT 464007 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||||||||| || || ||||||||| Sbjct 464008 CCAGTGAGAGTCTTGACGAAAATCTGCATA 464037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324620523860040