Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq17 138 1e-27 seq202 118 1e-21 seq196 95.1 1e-14 seq154 95.1 1e-14 >seq17 Length=1338299 Score = 138 bits (152), Expect = 1e-27 Identities = 458/707 (65%), Gaps = 18/707 (3%) Strand=Plus/Plus Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173 ||||| | |||||||| || || || | || ||| | || || || || || Sbjct 168003 GTATAGAGTTTCTCAAACTCCTCTCCCCAGCAATCATCGAGTCCTGGGCACTCGCATGGG 168062 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 |||||||| |||||||| | ||| || | || | |||| || | |||||| | ||| Sbjct 168063 CACATCAACGACCAATCTTGATCCTTCTCGACACGTTTCATGAAGAGATCTGGAACCCAG 168122 Query 48234 AGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCA 48293 || || | || || || | || | |||||| |||| | || | || | Sbjct 168123 AGGGCAAGGAACAAGTCACGAGCGCGCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCG 168182 Query 48294 AGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGT 48353 | || || | | || || |||||||| || | ||| || || | | ||||||| || Sbjct 168183 ACGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGATAGATAGCGAATGCACCTGGACGC 168242 Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || || ||||||||||| | ||| | ||||| ||||| ||||| | | |||||| | | Sbjct 168243 TTGTTTCCTCCTTGATCGACATAACGAGCAGTGTTGTTGTAAACACGGAGCATTGGAATA 168302 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACT--TCCACTAGCTCTTATATT-- 48469 | ||||| || | ||||||||||| | || ||| ||| | || | || || Sbjct 168303 AGTCCATTGGAAGTTCCATTGGTTCCGG--CGATGACTGATCCGGTGGCACGAATCTTGT 168360 Query 48470 --ACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGG 48527 || |||| | ||| || || || || | || || || || |||||| |||| || Sbjct 168361 GGAC--ATTG--AGACCAATTCCTCCAGCACTCTTCGAGATGAGTGCACACTGTTTCAGA 168416 Query 48528 GTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATT 48587 || || || ||||| || ||| || |||| | | | || || ||||| Sbjct 168417 GTGTCGTAGATTCCGAGAATCGAATCTTCGCTCATCGTGAGCAAGAAGCACGATGACATC 168476 Query 48588 TGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATG---AATAAACCATTTC 48644 || ||| |||| ||||| || || || | ||||| |||||||| || ||| | Sbjct 168477 TGTGGACGACACGTTCCAGAGTTGAAGAGAGTTGGTGATGCATGTGTCATGTACCGT--- 168533 Query 48645 TCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATA 48704 || || | ||| || |||||||| || | | | | || || | || || || ||| Sbjct 168534 TCCGACATCAAATTGTATGTTTCGATGGCGGCAGCAATGTCATTTCCGTGAATTCCGATA 168593 Query 48705 GATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGA 48764 | |||||||| ||||| | ||||| | ||||||| || || || || || | ||| Sbjct 168594 GCGACACGCATCAACATTTGCTGAGGACGCTCAACAACTTCTTTGTTAATCTTGAGAAGG 168653 Query 48765 TATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 || || || | ||| || || || || || |||| ||| |||| Sbjct 168654 TAGGACCGCTCGAGTGTCTTGAATCCGAAGTAAGTGTAGGAATAGTC 168700 Score = 132 bits (146), Expect = 5e-26 Identities = 290/434 (67%), Gaps = 3/434 (1%) Strand=Plus/Plus Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063 |||| || || || || || ||||| |||||||| | || ||||||| ||||| Sbjct 166603 GCTGGCTTAGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAG 166662 Query 47064 TGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTC 47123 ||||| || | | || || |||| | || ||||| || || |||||| Sbjct 166663 TGCATTGAGGTGATACCGGCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGAT 166722 Query 47124 TGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCC 47183 ||||| || ||||| || | |||||| ||||| || | ||| || | |||| |||||| Sbjct 166723 TGATCGATGAATGCTCCACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCC 166782 Query 47184 CATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAG---TATTTTGAATAGAT 47240 |||||||| || | || || ||||| ||||||| | | |||||||| ||| Sbjct 166783 CATACTGTGCGGTAGAGTTCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGAT 166842 Query 47241 CCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaat 47300 || ||| | || | | |||| || | |||| ||||| | | || || || Sbjct 166843 CCATTGTTGGCAATGAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCAAA 166902 Query 47301 gtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATAT 47360 || | | || ||||| ||||| || || || || || || || | ||| || Sbjct 166903 TCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAG 166962 Query 47361 ATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCT 47420 ||||| ||| ||||| || |||||||| || ||||||| ||||||||| || || || Sbjct 166963 ATATTGGATGTGTATGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCA 167022 Query 47421 GTAGGCATGGATGC 47434 || ||||| | ||| Sbjct 167023 GTTGGCATCGGTGC 167036 >seq202 Length=205773 Score = 118 bits (130), Expect = 1e-21 Identities = 277/416 (67%), Gaps = 3/416 (1%) Strand=Plus/Minus Query 47016 CGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTT 47075 || ||||| ||||| |||||||| | || ||||||| | || | ||| || Sbjct 120690 CGCAAATAGTACATTCCAGTCTTAACTCCCTTTTTCCATCCGTGAAAGTACATTGAGGTG 120631 Query 47076 AATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAAT 47135 | | | || || |||| || || ||||| || || |||||| |||||||| ||| Sbjct 120630 ACACTGGCGTAGCTGGGTTTTGCCATGTGAATGTTTAGCGATTGAGATTGATCAATGAAT 120571 Query 47136 GCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTA 47195 || || | |||||| ||||| || | | || | |||| |||||||||||| || Sbjct 120570 GCTCCACGATCAGCGGCCATCTCGATGGTTTCCTTCTGTGATATCTCCCATACGGTGCGG 120511 Query 47196 TAAATTTGTTTAATGTCTTCTGGGA--GATTAGTA-TTTTGAATAGATCCTCCgttttct 47252 || | | || ||||| || || | | | | |||||||||||||| ||| | Sbjct 120510 TAGAAATCCTTGATGTCGTCAGGAATTCCTGCGAAGTTTTGAATAGATCCGTTGTTAGCG 120451 Query 47253 ataattttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGA 47312 || | | |||| || | ||||| ||||| | | || ||| | || || | | Sbjct 120450 ATGAGTGTGTTCTTCATCTCATTGGACCACAATCCTCTCTCAATCAAATCCTTGAGCATG 120391 Query 47313 TGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTA 47372 || ||||| ||||| || || || || || || || | || || ||||| ||| Sbjct 120390 TGTGGATTCACAATCTGGAAGTCGCCGGAGAGCACGCGCCGAGAGTAGATATTCGATGTG 120331 Query 47373 TATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 ||||| |||||||| || || || |||| ||||||||| || || || || ||||| Sbjct 120330 TATGGCTCTATAGACTCGTTGTTACCAAGAATTTGAGCGGTGGAAGCAGTTGGCAT 120275 >seq196 Length=138734 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 ||| || |||| |||| ||||||||| || || | |||||||| | ||| ||| ||| Sbjct 135315 TTGGTACTCGGATACTCGTTTTTCAAAAAAGTTTGCCTTTCCCTCCATTGAAATATTTTC 135256 Query 18732 CATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAG 18791 |||||||||||| || || | | | ||| | |||| ||||| | ||||| ||||| Sbjct 135255 CATAAAATCAAAAGGGTTGGTCTCGTCATACAATTTTGAAAATCCAAGTTCTACGAGTAG 135196 Query 18792 TCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTT 18851 ||| || ||| | ||| ||| | ||||||| || | ||||| || || | || Sbjct 135195 GTGATCAGCAACATAACGAATGTATTTCTTCATCAAATATCTGTTCATGCCAATAACGTT 135136 Query 18852 AACAGGTAGTGCATCTGTAAGAAATTC 18878 ||||| || || || || | ||| || Sbjct 135135 GACAGGAAGAGCCTCAGTCAAAAAATC 135109 >seq154 Length=279404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 ||| || |||| |||| ||||||||| || || | |||||||| | ||| ||| ||| Sbjct 593 TTGGTACTCGGATACTCGTTTTTCAAAAAAGTTTGCCTTTCCCTCCATTGAAATATTTTC 652 Query 18732 CATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAG 18791 |||||||||||| || || | | | ||| | |||| ||||| | ||||| ||||| Sbjct 653 CATAAAATCAAAAGGGTTGGTCTCGTCATACAATTTTGAAAATCCAAGTTCTACGAGTAG 712 Query 18792 TCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTT 18851 ||| || ||| | ||| ||| | ||||||| || | ||||| || || | || Sbjct 713 GTGATCAGCAACATAACGAATGTATTTCTTCATCAAATATCTGTTCATGCCAATAACGTT 772 Query 18852 AACAGGTAGTGCATCTGTAAGAAATTC 18878 ||||| || || || || | ||| || Sbjct 773 GACAGGAAGAGCCTCAGTCAAAAAATC 799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562085577880200