Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq11 118 9e-22 seq441 107 2e-18 >seq11 Length=2072269 Score = 118 bits (130), Expect = 9e-22 Identities = 298/451 (66%), Gaps = 8/451 (2%) Strand=Plus/Minus Query 29939 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACT 29998 |||| ||||| ||||| || || ||||||||||||||||| | ||| ||||||| Sbjct 204008 CCATATCCCCGCTTCTCTGATAAAGTTGACACGAGAGCTCTCCATTCTCCACATAAAACT 203949 Query 29999 GACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGC 30058 ||||||| ||||| ||||| || | |||| | ||||| || || ||||| ||| Sbjct 203948 GACACATCGTGTGACACGGTGGCAACACCATCTGACCCAAATCCGACGGATTCCACGCGG 203889 Query 30059 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT---GAGGTCCACGGCGTTTTGC- 30114 ||| |||||| |||| | || || | | | |||| || ||| || || Sbjct 203888 ACATGATGATTCGCCGGCTGTCGGGCTCCTCCTTGATTTGTCGGATCAC----TTCGGCG 203833 Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174 |||||||| || ||| || | |||||| | ||| ||| | || |||||| Sbjct 203832 AGCTGATCGACACCCTGACCGGTGTAGTCAGTGTGACAATCCACGTATTTCGCGCCGAAA 203773 Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234 || |||||||| || ||||| || || || ||||| ||||| || | | ||| || Sbjct 203772 TGTCTCCACTGAAATCCGTAGACTGGCCCGAGGTCACCCTCCTCGCGAGTCGTGAATCCG 203713 Query 30235 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAG 30294 ||||| | ||| | ||||| ||||| || ||||| ||| | | Sbjct 203712 AGGTTGTCGAGGAAGGAGCGATCGCCGTTCTTCTCCCAAATTTTTACATTTTTCGCCGCC 203653 Query 30295 AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTC 30354 | | ||| || ||||| || || |||||| |||||||| || | || ||||| Sbjct 203652 AACAGTTTTCCGTCGGTGGAGCCGGAGATGAACCAGAGCAGCTCTTCGAGCACTCCCTTC 203593 Query 30355 CAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 ||| |||| | ||| || ||||| || |||| Sbjct 203592 CAATAGACACGCTTTGTGGTGAGCAGTGGAA 203562 >seq441 Length=99109 Score = 107 bits (118), Expect = 2e-18 Identities = 187/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 29953 CTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGG 30012 ||||| || || ||||||||||||||||| | ||| |||||||||||||| || || Sbjct 96400 CTCTGATAAAGTTGACACGAGAGCTCTCCATTCTCCACATAAAACTGACACATCGTATGA 96459 Query 30013 CACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGC 30072 ||||| || | |||| | ||||| || || ||||| ||| ||| |||||| ||| Sbjct 96460 CACGGTGGCAACACCATCTGACCCAAATCCGACGGATTCCACGCGGACATGATGATTCGC 96519 Query 30073 CTGTCTTCTGGGTTGTTCCTGAT---GAGGTCCACGGCGTTTTGC-AGCTGATCCACCCC 30128 | | || || | | | |||| || ||| || || |||||||| || || Sbjct 96520 CGGCTGTCGGGCTCCTCCTTGATTTGTCGGATCAC----TTCGGCGAGCTGATCGACACC 96575 Query 30129 CATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAA 30188 | || | |||||||| ||| ||| | ||||||||||| |||||||| || Sbjct 96576 CTGACCGGTGTAGTCTGTGTGACAATCCACGTATTTCGCTCCGAAATGTCTCCACTGAAA 96635 Query 30189 CCCGTACACCGGTCCCAGGTCTCCCTCTTC 30218 ||||| || || || ||||| ||||| || Sbjct 96636 TCCGTAGACTGGCCCGAGGTCACCCTCCTC 96665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408601141010765