Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq19 122 7e-23 seq24 98.7 8e-16 >seq19 Length=917137 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || | ||||||||| ||||| ||||| || |||||||||| | Sbjct 764561 CCTCCACGGAGACGGAGGACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAG 764620 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| ||||||||||| || || || || | | || || || || || Sbjct 764621 AGAGTGCGGCCATCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 764680 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || || || || |||| | ||||| || | ||| ||| Sbjct 764681 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACT 764740 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || ||||| ||||| || || || |||||||| Sbjct 764741 TCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 764787 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || |||||||| || || || ||||| ||||||||||| | Sbjct 765528 CCTCCACGAAGACGGAGCACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAA 765587 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| ||||||||||| || || || || | ||| || ||||| || ||| Sbjct 765588 AGAGTTCTTCCATCCTCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGA 765647 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || ||||| ||||| || || |||| | ||||| || | ||| ||| Sbjct 765648 ATTCCCTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACT 765707 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || || || | || || || || |||||||| Sbjct 765708 TCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 765754 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || || | ||| || ||||||||||| || || || || || || |||| Sbjct 764789 CCTCCTCTCAAGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAC 764848 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || || || ||||||||||||||||| || || Sbjct 764849 AAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGG 764908 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || ||||| || || || || | || | ||||| || | ||| ||| Sbjct 764909 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACT 764968 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || ||||| | || || || || |||||||| Sbjct 764969 TCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 765015 Score = 109 bits (120), Expect = 4e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || |||||||||||||| ||||| || || || |||| | Sbjct 765300 CCTCCACGAAGACGAAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAG 765359 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||||||||| || || || ||||| | || || || || || Sbjct 765360 AGGGTGCGACCATCCTCCAATTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGTGGG 765419 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||| || || || || || | || | || ||||| | ||| || Sbjct 765420 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTTCGACC 765479 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || ||||||| || || || || | ||| || || || |||||||| | | |||||| Sbjct 765480 TCGAGAGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATACCTCCACGAAGA 765539 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || || || || || ||||| || | | |||||| |||| ||| Sbjct 764351 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCC 764410 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || || || || | ||| || ||||| || || || || || || |||||| Sbjct 764411 AATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 764470 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || |||| | ||||| || | || ||||| || |||| || || Sbjct 764471 ATCTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACTTCGAGGGTGATGGTCTTT 764530 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || || || |||||||| Sbjct 764531 CCAGTCAAGGTCTTGACGAAGATCTGCAT 764559 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||| | | ||| | ||| | ||| ||||| || || || || || || || |||| Sbjct 763823 TCCTCCACGAAGACGGAGAACGAGATGGAGGGTCGACTCCTTCTGGATGTTATAGTCGGA 763882 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | || | | |||| || | ||||| || || || ||||||||||||||||| || || Sbjct 763883 CAAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGG 763942 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 || || || || ||||| || || || || | || | ||||| || | ||| || Sbjct 763943 GATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGAC 764002 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| | |||| || || ||||| | || || || || |||||||| Sbjct 764003 TTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 764050 >seq24 Length=791117 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || |||||||||||||| ||||| || || || |||| | Sbjct 463181 CCTCCACGGAGACGAAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAG 463240 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||||||||| || || || || | | || || || || || Sbjct 463241 AGGGTGCGACCATCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 463300 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||| || || || || || | || | || ||||| | | | ||| Sbjct 463301 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACT 463360 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || || || || | ||| || || || |||||||| Sbjct 463361 TCGAGAGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 463407 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || ||||| |||||||| ||||| || || || |||| | Sbjct 463810 CCTCCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGGAG 463869 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||||||||| || || || || | | || || || || || Sbjct 463870 AGGGTGCGACCATCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 463929 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||| || || || || || | || | || ||||| | | | ||| Sbjct 463930 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACT 463989 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || || || || | ||| || || || |||||||| Sbjct 463990 TCGAGAGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 464036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396262438029885