Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq69 116 5e-21 >seq69 Length=836810 Score = 116 bits (128), Expect = 5e-21 Identities = 197/279 (71%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 197022 CAGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTA--CATCTGGTTG 197079 || ||| ||||| ||| || || || |||||||||| |||||| | |||| | | Sbjct 206880 CAAATCATCGTCAGAAAACCCAGTTCCAATCTTACAAACACTTTCGTATTCTTCTG-TAG 206822 Query 197080 TCGGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCG 197139 ||| ||||||||| | || | | | | ||||| ||| ||||| ||||| || Sbjct 206821 ACGG-ATTGTAACACCCAAGAAGGTATCCTCCGTACACTCCAGTTCTTTTTCCATTACCA 206763 Query 197140 TTGAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTC 197199 || || |||| ||||| || ||||||| ||||||| || || |||| |||||||| Sbjct 206762 ATGTAGGCTCCCATAACAACAAGATCCAATGTGTCGCCAACTCCATCCACATAATCTTTT 206703 Query 197200 TTCAGTTTGAGCCAGCTTCTAGATC-TCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAG 197258 |||| ||| ||||||||| | |||| |||| | ||| || || || || | ||| || Sbjct 206702 TTCATTTTAAGCCAGCTTTTCGATCGTCTT-GAAATTTCATATGTAGCCTCAGTGTCTAG 206644 Query 197259 GGTCTTGATCATCAATCCCTCGCAATCTTCCTTCACGGC 197297 ||| || ||||| | || ||||| | | || |||||| Sbjct 206643 GGTTTTAATCATAAGACCTTCGCATTTGTTCTGCACGGC 206605 Score = 111 bits (122), Expect = 2e-19 Identities = 198/280 (71%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 197022 CAGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTC 197081 || ||| ||||| ||| || || || |||||||||| |||||| ||| | || Sbjct 225010 CAAATCATCGTCAGAAAACCCAGTTCCAATCTTACAAACACTTTCGTAT-TCTTCT-GTA 224953 Query 197082 G--GGATTGTAACAGGCGAGTAAGA-AAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCC 197138 | ||||||||||| | || |||| | | ||||| ||| ||||| ||||| || Sbjct 224952 GATGGATTGTAACACCCAAG-AAGATATCCTCCGTACACTCCGGTTCTTTTTCCATTACC 224894 Query 197139 GTTGAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTT 197198 || || |||| ||||| || ||||||| ||||||| || || |||| |||||||| Sbjct 224893 AATGTAGGCTCCCATAACAACAAGATCCAATGTGTCGCCAACTCCATCCACATAATCTTT 224834 Query 197199 CTTCAGTTTGAGCCAGCTTCTAGATC-TCTTGGCAATCTCGTAGGTTGCGTTTACGTCCA 197257 |||| ||| ||||||||| | |||| |||| | ||| || || || || | ||| | Sbjct 224833 TTTCATTTTAAGCCAGCTTTTCGATCGTCTT-GAAATTTCATATGTAGCCTCAGTGTCTA 224775 Query 197258 GGGTCTTGATCATCAATCCCTCGCAATCTTCCTTCACGGC 197297 |||| || ||||| | || ||||| | | || |||||| Sbjct 224774 GGGTTTTAATCATAAGACCTTCGCATTTGTTCTGCACGGC 224735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676701642608400