Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq19 104 2e-17 seq356 89.7 4e-13 >seq19 Length=917137 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||||||| || || ||| |||||||| ||||| ||||| Sbjct 766037 CCTCCTCTGAGACGGAGCACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAC 766096 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || ||||||||||| ||||| || || |||| ||| ||||| | || Sbjct 766097 AATGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGG 766156 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| ||| ||| | | | || || || || || Sbjct 766157 ATTCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATTGTGTCGGAAGCTTCGACT 766216 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| || | ||| || ||||| |||||||| Sbjct 766217 TCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766263 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| ||||| ||| | || | || || | |||||| ||||| || Sbjct 766528 CTCCTTCTGGATGTTGTAGTCAGACAGAGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAA 766587 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || || ||||| || | |||| |||||||| || ||||| || ||| Sbjct 766588 GATGAGACGTTGTTGGTCTGGTGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATT 766647 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||||| || || |||||||| ||||| ||||| || Sbjct 766648 CTCGATGGTGTCGGAAGCCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAACGTTTTGAC 766707 Query 48755 AAAAATCTGCAT 48766 || || ||||| Sbjct 766708 GAAGATTTGCAT 766719 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| ||| ||||| ||||||||||| || ||| ||| Sbjct 765537 AGACGGAGCACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAAAGAGTTCTT 765596 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || || || || || || || ||||| | |||| |||||| Sbjct 765597 CCATCCTCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATTCCCTCC 765656 Query 48669 TTGTC 48673 ||||| Sbjct 765657 TTGTC 765661 >seq356 Length=129202 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 ||||| || ||||| | || ||||| | || || || ||||| | || || ||||| Sbjct 127567 GATTTTCTCGCAAATCATCTGGGCAATACGATCGCCTTTCTTCACCTCGAAATCAGTGTC 127626 Query 9135 GGAATGA--TTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCA 9192 | ||| ||||| || | || || | || | ||||| |||||| || ||| Sbjct 127627 GT--TGAAGTTGAAGAGAAGAACCTTGACTTCTCCACGATAATCGCTATCGATGACGCCA 127684 Query 9193 GCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAG 9252 || || || ||||||||||| ||| | || |||||||| || || || | |||||||||| Sbjct 127685 GCTCCGACATCGATGAAGTGTTTGGCAGCGAGTCCAGATCGTGGAGCAACTCGACCGTAG 127744 Query 9253 CATCCCACCGGTAATTGCAC 9272 |||| | ||||||| ||| Sbjct 127745 TATCCAAAAGGTAATTCCAC 127764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380922255952515