Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7 127 4e-24 seq17 116 7e-21 seq202 91.5 3e-13 >seq7 Length=1891389 Score = 127 bits (140), Expect = 4e-24 Identities = 222/323 (69%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || || |||||||| || | ||||| || ||| ||||||| Sbjct 174549 CCTGGCATAAGTCCGCGCTTCTTAAGCCAGAAGATCGAGGCGAACGATCCACTGAAGAAG 174608 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 ||||| || || || ||||| ||| |||| | ||| |||| || || |||| || || Sbjct 174609 ATGCCTTCGACGGCGGCGAAAGCGATGAGACGCTCGGCGAACGAGGCCTTCTGATCCGAA 174668 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| || |||||||| ||||||||||||||| || | | ||||| Sbjct 174669 ATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGAATTCAAACTCGAAGATGGCGTTA 174728 Query 48371 AAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 || | ||| | | ||| |||| || ||||| | ||||| | |||||| Sbjct 174729 AACAACTTATGTCTCTCTTGCTCGTCACGAATGTAGGTCTCAATGAGCTTCGAATACATC 174788 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | |||||| || ||||| ||||| ||||||||| | ||||||| | ||| Sbjct 174789 TCCGAGTGGATATTCTCGATGGCGATTTGGAATCCGTAGAAGAAACGGGCCTCAGAGACC 174848 Query 48491 TGCACTTCTGTGGAGAATCTCTC 48513 | || || | ||||| | ||| Sbjct 174849 TTTACCTCATTTGAGAAGCGCTC 174871 >seq17 Length=1338299 Score = 116 bits (128), Expect = 7e-21 Identities = 319/483 (66%), Gaps = 23/483 (5%) Strand=Plus/Plus Query 212575 CAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCA 212634 |||| | ||| || || | |||||||| || ||||| || ||||| ||| |||| | Sbjct 166601 CAGCTGGCTTAGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGA 166660 Query 212635 TGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTA 212694 |||||||| |||| | | | || || | ||| ||||| | || | Sbjct 166661 AGTGCATTGAGGTGA--TAC--CGGCGTAGCTT---GGTT-------TGGCCATG-TGAA 166705 Query 212695 GGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATAT 212754 ||| || || ||| || || ||||||| | | ||||| ||||| || || || | Sbjct 166706 TGTTGAGTGATTGAGATTGATCGATGAATGCTCCACGATCAGCAGCCATCTCGATAATCT 166765 Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGG 212814 | |||| |||| |||||| || || | ||| ||| |||| ||| ||||||| || | Sbjct 166766 CCTTCTGTGAGATCTCCCATACTGTGCGGTAGAGTTCCTTGATGTCATCTGGGATTCCTG 166825 Query 212815 GGATGTTCTGCACAGACCCCCTGTGT---ATG-GTCAGCTGCAGGCGCATGTCCTCGTTC 212870 ||||||| || | || || ||| ||| ||| | | ||| || ||| | Sbjct 166826 GGATGTTTTGAATGGATCCATTGTTGGCAATGAGTCTGTTCTT----CATCTCATCGGAC 166881 Query 212871 CAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCT 212930 || | || || ||| ||||| || ||| || || || |||||||||||||| Sbjct 166882 CACAATCCTCTCTCGACCAAATCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCACCG 166941 Query 212931 GAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCC 212990 |||||||| | | ||| | || || ||||| ||||| || |||||||| || Sbjct 166942 GAGAGCACACGTCGGGAGTAGATATTGGATGTGTATGGCTCAATAGATTCGTTGTTTCCA 167001 Query 212991 AGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCG 213050 ||||| || || ||| || || ||||| || |||| || |||||||| | |||||| Sbjct 167002 AGAATTTGAGCGGTGGAAGCAGTTGGCATCGGTGCCATTAGAAGACTGTTGCGGACTCCG 167061 Query 213051 TGC 213053 ||| Sbjct 167062 TGC 167064 >seq202 Length=205773 Score = 91.5 bits (100), Expect = 3e-13 Identities = 240/360 (67%), Gaps = 6/360 (2%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 ||| || || ||| || || ||||||| | | ||||||||||| || ||| | || Sbjct 120598 GTTTAGCGATTGAGATTGATCAATGAATGCTCCACGATCAGCGGCCATCTCGATGGTTTC 120539 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 |||| || | |||||| ||||| | ||| || |||| ||| || || | || | Sbjct 120538 CTTCTGTGATATCTCCCATACGGTGCGGTAGAAATCCTTGATGTCGTCAGGAATTCCTGC 120479 Query 212816 GATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCG-CATGTCCTCGTTCCAGA 212874 || ||| || | ||| || ||| | | || || | ||| || | | ||| | Sbjct 120478 GAAGTTTTGAATAGATCCGTTGTTAGCGATGAG-TGTGTTCTTCATCTCATTGGACCACA 120420 Query 212875 GGCCCCTGGTC--TCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 || || || || | | ||||| || ||| || || || ||||||||||| || || Sbjct 120419 ATCCTCTC-TCAATCAAATC-CTTGAGCATGTGTGGATTCACAATCTGGAAGTCGCCGGA 120362 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 |||||| | || ||| | || || ||||| ||||| || ||||||||| || || Sbjct 120361 GAGCACGCGCCGAGAGTAGATATTCGATGTGTATGGCTCTATAGACTCGTTGTTACCAAG 120302 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052 ||| || || ||| || || ||||| || |||| | |||||||| | |||| ||| Sbjct 120301 AATTTGAGCGGTGGAAGCAGTTGGCATCGGCGCCATTCGAAGACTGTTACGGACTCAGTG 120242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931494316051200