Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7 104 4e-17 >seq7 Length=1891389 Score = 104 bits (114), Expect = 4e-17 Identities = 211/308 (69%), Gaps = 4/308 (1%) Strand=Plus/Minus Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749 |||||||| ||||| || |||||||| ||| | ||||| ||| ||||| | ||||| | Sbjct 174829 TTCTACGGATTCCAAATCGCCATCGAGAATATCCACTCGGAGATGTATTCGAAGCTCATT 174770 Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 ||| |||||| |||| |||||| || | ||||| |||||| | | Sbjct 174769 GAGACCTACATTCGTGACGAGCAAGAGAGACATAAGTTGTTTAACGCCATCTTCGAGTTT 174710 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 |||||||| |||||| ||||| | |||||||| |||| || || Sbjct 174709 GAATTCATCAAGAAGAAGGCCGACTGGGCTCTCAAGTGGATTTCGGATCAGAAGGCCTCG 174650 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || | |||||| || | || || || || || || |||||||| ||||| || ||||| Sbjct 174649 TTCGCCGAGCGTCTCATCGCTTTCGCCGCCGTCGAAGGCATCTTCTTCAGTGGATCGTTC 174590 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACT-TTTCCAACG 25987 || | ||||||||||| ||| || | |||| ||||| || || ||| || |||| Sbjct 174589 GCCTCGATCTTCTGGCTTAAGAAG-CGCGGACTTATGCCAGGATTG-ACTCACTCAAACG 174532 Query 25988 AGCTCATC 25995 |||| ||| Sbjct 174531 AGCTGATC 174524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928806427099200