Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq41 120 4e-22 seq381 116 4e-21 >seq41 Length=1292958 Score = 120 bits (132), Expect = 4e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || || || || ||||| || |||||||||||||||||||||||||| || Sbjct 756834 ACTCCAATTGGTCCAACACCTGGACCACCTCCTCCATGTGGAATACAGAATGTCTTGTGC 756775 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || |||||| | ||||| ||| || || | ||| | || || || ||| Sbjct 756774 AAGTTCAGATGAGAGACATCACTACCGTAATCTCCTGGACGACACAATCCAACTTGAGCA 756715 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | ||| || ||||| | ||| || || || |||| |||||||| | | ||| | Sbjct 756714 TTCATATTCGCTCCATCCAAATAAACTTGTCCTCCATGCTCATGAACCTTATCACAGACA 756655 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATA 138416 | | || || ||||| || |||||||| ||||||||||| | ||| ||| Sbjct 756654 TCACGAATCGATGACTCAAAAACTCCATGAGTAGATGGATATGTGACCATGATA 756601 >seq381 Length=149086 Score = 116 bits (128), Expect = 4e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || || || || ||||| || |||||||||||||||||||||||||| || Sbjct 5780 ACTCCAATTGGTCCAACACCTGGACCACCTCCTCCATGTGGAATACAGAATGTCTTGTGC 5839 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || | |||| | ||||| ||| || || | ||| | || || || ||| Sbjct 5840 AAGTTCAAATGAGAGACATCACTACCGTAATCCCCTGGACGACACAATCCAACTTGAGCA 5899 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | ||| || ||||| | ||| || || || |||| |||||||| | | ||| | Sbjct 5900 TTCATATTAGCTCCATCCAAATAAACTTGTCCTCCATGCTCATGAACCTTATCACAGACA 5959 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATA 138416 | | || || ||||| || ||||||||||| |||||||| | ||| ||| Sbjct 5960 TCACGAATCGATGACTCAAAAACTCCATGAGTCGAGGGATATGTGACCATGATA 6013 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 |||||||| ||||||| | |||||||||| || ||||| || || || ||||||||| Sbjct 7137 CCATGATAAACTGCATACATAGCAGACATATTGGCAAGCAGAGCCTGGGCAGTGCAGATG 7196 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAA 139384 ||||| ||||||||||| | | ||||||||| || | || || || || || Sbjct 7197 TTACTTGTTGCTTTGTCACGACGAATATGCTGTTCACGGGTCTGAAGAGCCAA 7249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578974480128600