Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq314 109 7e-19 >seq314 Length=102929 Score = 109 bits (120), Expect = 7e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 47986 TCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTT 48045 |||||||| || ||||| ||| | || || |||| || | ||||||||||| Sbjct 3917 TCATGATTGAAGAGAATTCCATTGCATGCGAACATGTTATAGGCCTCACGATAGTTGACC 3976 Query 48046 ACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTG 48105 || |||||||| ||||| | || || ||| | || ||||| | ||||||||| || || Sbjct 3977 ACAATCCAGTATCCATACATCTTGGCGACAGCGTATGGAGATCTTGGATAGAATGGAGTC 4036 Query 48106 GTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAG 48165 |||| | |||||| ||||||| || || ||||| | ||| ||||| ||||||||| Sbjct 4037 TTCTCACTTTGTGGAATCTCTTGTACTTTTCCATACAATTCCGATGTGGACGCTTGATAG 4096 Query 48166 ATACGAAC 48173 | ||| || Sbjct 4097 AAACGCAC 4104 Score = 109 bits (120), Expect = 7e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 47986 TCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTT 48045 |||||||| || ||||| ||| | || || |||| || | ||||||||||| Sbjct 18701 TCATGATTGAAGAGAATTCCATTGCATGCGAACATGTTATAGGCCTCACGATAGTTGACC 18760 Query 48046 ACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTG 48105 || |||||||| ||||| | || || ||| | || ||||| | ||||||||| || || Sbjct 18761 ACAATCCAGTATCCATACATCTTGGCGACAGCGTATGGAGATCTTGGATAGAATGGAGTC 18820 Query 48106 GTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAG 48165 |||| | |||||| ||||||| || || ||||| | ||| ||||| ||||||||| Sbjct 18821 TTCTCACTTTGTGGAATCTCTTGTACTTTTCCATATAATTCCGATGTGGACGCTTGATAG 18880 Query 48166 ATACGAAC 48173 | ||| || Sbjct 18881 AAACGGAC 18888 Score = 109 bits (120), Expect = 7e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 47986 TCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTT 48045 |||||||| || ||||| ||| | || || |||| || | ||||||||||| Sbjct 39864 TCATGATTGAAGAGAATTCCATTGCATGCGAACATGTTATAGGCCTCACGATAGTTGACC 39923 Query 48046 ACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTG 48105 || |||||||| ||||| | || || ||| | || ||||| | ||||||||| || || Sbjct 39924 ACAATCCAGTATCCATACATCTTGGCGACAGCGTATGGAGATCTTGGATAGAATGGAGTC 39983 Query 48106 GTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAG 48165 |||| | |||||| ||||||| || || ||||| | ||| ||||| ||||||||| Sbjct 39984 TTCTCACTTTGTGGAATCTCTTGTACTTTTCCATACAATTCCGATGTGGACGCTTGATAG 40043 Query 48166 ATACGAAC 48173 | ||| || Sbjct 40044 AAACGCAC 40051 Score = 109 bits (120), Expect = 7e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 47986 TCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTT 48045 |||||||| || ||||| ||| | || || |||| || | ||||||||||| Sbjct 54237 TCATGATTGAAGAGAATTCCATTGCATGCGAACATGTTATAGGCCTCACGATAGTTGACC 54296 Query 48046 ACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTG 48105 || |||||||| ||||| | || || ||| | || ||||| | ||||||||| || || Sbjct 54297 ACAATCCAGTATCCATACATCTTGGCGACAGCGTATGGAGATCTTGGATAGAATGGAGTC 54356 Query 48106 GTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAG 48165 |||| | || ||| ||||||| || || ||||| | ||| ||||||||||||||| Sbjct 54357 TTCTCACTTTGCGGAATCTCTTGTACTTTTCCATACAATTCCGATGTGGATGCTTGATAG 54416 Query 48166 ATACGAAC 48173 | ||| || Sbjct 54417 AAACGGAC 54424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665466906762600