Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq17 152 6e-32 seq202 122 1e-22 seq486 91.5 2e-13 seq178 91.5 2e-13 seq149 86.0 7e-12 >seq17 Length=1338299 Score = 152 bits (168), Expect = 6e-32 Identities = 299/438 (68%), Gaps = 8/438 (2%) Strand=Plus/Minus Query 76493 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 76552 || ||||||||| | |||||||| |||||||| || |||||||| ||||| | || || Sbjct 167054 CGCAACAGTCTTCTAATGGCACCGATGCCAACTGCTTCCACCGCTCAAATTCTTGGAAAC 166995 Query 76553 AATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAG 76612 || |||| |||| ||||||||| | || |||||| || | ||| | ||||| Sbjct 166994 AACGAATCTATTGAGCCATACACATCCAATATCTACTCCCGACGTGTGCTCTCCGGTGAC 166935 Query 76613 TTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAG 76672 || ||||| || ||| | |||| || | ||| || | |||||| | Sbjct 166934 TTCCAGATTGTGAATCCACACATGCTCAAGGATTTGGTCGAGAGAGGATTGTGGTCCGAT 166875 Query 76673 GATATGAAGGAT---CTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATC 76729 || |||||| | ||||| | || ||| ||||||||||| ||| ||| ||| Sbjct 166874 GAGATGAAGAACAGACTCATTGCCAACAA---TGGATCCATTCAAAACATCCCAGGAATC 166818 Query 76730 CCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATT 76789 |||||||| |||||| | |||||||||||||| ||||| ||| ||| || | || Sbjct 166817 CCAGATGACATCAAGGAACTCTACCGCACAGTATGGGAGATCTCACAGAAGGAGATTATC 166758 Query 76790 GACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATG 76849 || ||||| || |||||||| ||||| |||||| |||| | || | |||| Sbjct 166757 GAGATGGCTGCTGATCGTGGAGCATTCATCGATCAATCTCAATCACTCAACATTCACATG 166698 Query 76850 GAAAGTCCAA-CGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCT 76908 | | |||| | | | || || | || ||||| | |||| ||||| |||| || Sbjct 166697 GCCAAACCAAGCTACG-CCGGTATCACCTCAATGCACTTCTACGGATGGAAGAAGGGACT 166639 Query 76909 CAAAACCGGAATGTACTA 76926 ||| || ||||||||||| Sbjct 166638 CAAGACTGGAATGTACTA 166621 Score = 123 bits (136), Expect = 3e-23 Identities = 301/453 (66%), Gaps = 5/453 (1%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || |||||| ||||| || |||||||||||| || ||| || ||| | Sbjct 167693 GAAACTGGACTTCCATACATCACCTACAAGGATGCTGCCAATCGCAAGTCCAATCAACAA 167634 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 || | ||||| ||||| |||| ||||| ||||||||||| | |||||| | | | Sbjct 167633 AACCTCGGAACCATCAAATGCTCCAATCTGTGCACGGAAATCATCGAGTACTCTGCTCCA 167574 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAG-TATGTCAATGAAGA 76083 ||||||| ||||| |||||| | || || ||||| || | | | | ||||| | || Sbjct 167573 GATGAGATCGCTGTCTGCAATCTTGCTTCTATCGCTCT-CAACCGATTTGTCACTCCTGA 167515 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 || || ||||||| | || ||| ||| | || || | | || |||||||| Sbjct 167514 GAAG---ACGTTTGATTTCAAGAAGCTTGCTGAGGTTACCAAAGTGATAACGAAAAATCT 167458 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCG 76203 ||| |||| || |||| ||| || ||||| || || || || || ||||| Sbjct 167457 GAACAAGATCATCGATGTCAATTATTACCCAGTTGAAGAAGCACGTAACTCGAACATGCG 167398 Query 76204 ACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTA 76263 || | || ||||| | || |||||||| ||||| ||| || || ||| | | Sbjct 167397 TCATCGTCCAATTGGACTTGGAGTTCAAGGACTCGCTGATTGTTTCATGTTGATGAGATT 167338 Query 76264 CGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323 | |||| |||||| | ||||| || |||| || ||||| ||||| || || | Sbjct 167337 CCCATTCACTTCAGAAGGAGCCAGAGATTTGAACAAGCGCATCTTCGAAACAATCTACTA 167278 Query 76324 CGCATCCCTGGAGGCGAGTTGTGAATTGGCTGA 76356 || | || || || ||||| ||||||||||| Sbjct 167277 TGCTGCTCTCGAAGCCAGTTGCGAATTGGCTGA 167245 >seq202 Length=205773 Score = 122 bits (134), Expect = 1e-22 Identities = 301/452 (67%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 76493 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 76552 |||||||||||| ||||| || |||||||| || |||||||| ||||| | ||||| Sbjct 120251 CGTAACAGTCTTCGAATGGCGCCGATGCCAACTGCTTCCACCGCTCAAATTCTTGGTAAC 120310 Query 76553 AATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAG 76612 || || | | || ||||||||| | || |||||| | | ||| | || || Sbjct 120311 AACGAGTCTATAGAGCCATACACATCGAATATCTACTCTCGGCGCGTGCTCTCCGGCGAC 120370 Query 76613 TTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAG 76672 || ||||| || ||| | |||| || | | ||| || | |||||||| Sbjct 120371 TTCCAGATTGTGAATCCACACATGCTCAAGGATTTGATTGAGAGAGGATTGTGGTCCAAT 120430 Query 76673 GATATGAAGGAT---CTCATGGTGAA-AGCGGGTGGTTCCATTCAAAATATCTCAGATAT 76728 || |||||| | ||||| | || | ||| | | |||||||| || ||| || Sbjct 120431 GAGATGAAGAACACACTCATCGCTAACAACGGAT----CTATTCAAAACTTCGCAGGAAT 120486 Query 76729 CCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCAT 76788 || || || |||||| || |||||||||| || ||||| || ||| || ||| Sbjct 120487 TCCTGACGACATCAAGGATTTCTACCGCACCGTATGGGAGATATCACAGAAGGAAACCAT 120546 Query 76789 TGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCAT 76848 || |||||||| |||||||| |||||||||||| |||| | || | ||| Sbjct 120547 CGAGATGGCCGCTGATCGTGGAGCATTCATTGATCAATCTCAATCGCTAAACATTCACAT 120606 Query 76849 GG-AAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGC 76907 || ||| ||| | | | ||| || | || ||| | | ||| |||||| |||| Sbjct 120607 GGCAAAACCCAGCTACG-CCAGTGTCACCTCAATGTACTTTCACGGATGGAAAAAGGGAG 120665 Query 76908 TCAAAACCGGAATGTACTATCTCCGATCAAAG 76939 | || || |||||||||||| | || || ||| Sbjct 120666 TTAAGACTGGAATGTACTATTTGCGTTCTAAG 120697 >seq486 Length=71490 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || |||||||| || || || || || | || || ||| ||||||| |||||| Sbjct 49221 CCGGGAACGGGAAAAACACTTCTAGCTAAGGCAACAGCAGGAGAAGCAAATGTACCATTC 49162 Query 175375 ATCCAGTG-CTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || | || ||||| || | ||| | || ||||||||||| || || | ||| || Sbjct 49161 ATT-ACTGTCTCTGGATCAGAATTTCTCGAAATGTTTGTTGGAGTCGGACCAGCAAGAGT 49103 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 ||| ||| | ||| || ||| | | ||| |||||||||| | ||||||||||| || Sbjct 49102 TCGTGATATGTTTTCCATGGCCAGGAAGAATTCACCATGTATTTTGTTCATTGATGAAAT 49043 Query 175494 TGATGCGGTGGG 175505 |||||| || || Sbjct 49042 TGATGCTGTAGG 49031 >seq178 Length=305597 Score = 91.5 bits (100), Expect = 2e-13 Identities = 245/369 (66%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || |||||||| || || || || || | || || ||| ||||||| |||||| Sbjct 261234 CCGGGAACGGGAAAAACACTTCTAGCTAAGGCAACAGCAGGAGAAGCAAATGTACCATTC 261293 Query 175375 ATCCAGTG-CTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || | || ||||| || | ||| | || ||||||||||| || || | ||| || Sbjct 261294 ATT-ACTGTCTCTGGATCAGAATTTCTCGAAATGTTTGTTGGAGTCGGACCAGCAAGAGT 261352 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 ||| ||| | ||| || ||| | | ||| |||||||||| | ||||| ||||| || Sbjct 261353 TCGTGATATGTTTTCCATGGCCAGGAAGAATTCACCATGTATTTTGTTCATCGATGAAAT 261412 Query 175494 TGATGCGGTGG---GCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGA 175550 |||||| || | | |||| | | | || || ||| || || || ||| Sbjct 261413 TGATGCTGTAGGAAGAAAGCGAGGAGGAAAAGGAGGAATGGGAGGTCATTCTGAACAAGA 261472 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT--TGACA-ATGAGACTGGCAT 175607 | | ||| | ||||||||||| || |||||||| || ||| | ||| || | Sbjct 261473 AAACACACTCAATCAACTACTTGTTGAAATGGATGGATTCACAACAGACGAGTCTTCAGT 261532 Query 175608 TGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGG 175667 | | || ||||| || || || | || ||||| || ||| || || || || || || Sbjct 261533 TATTGTCATTGCTGCTACGAACAGAGTTGATATTCTCGATTCTGCACTTCTCCGTCCTGG 261592 Query 175668 TCGTTTTGA 175676 ||||| || Sbjct 261593 ACGTTTCGA 261601 >seq149 Length=436469 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 13605 AGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCT 13664 ||||||| | || |||| ||||| ||||| || ||||| | || ||||| ||||| Sbjct 107639 AGTGTACATTGATCCTCACGGAGGGAGATTCTGCCAAAACTTTGGCAGTTGCCGGTCTTG 107698 Query 13665 CTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAA 13711 ||||||| |||||||| | ||||| || ||||||||||| || ||| Sbjct 107699 CTGTCGTCGGTCGTGACAAGTACGGAGTCTTCCCACTTCGAGGAAAA 107745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596544954218400