Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq19 105 1e-17 seq24 100 5e-16 >seq19 Length=917137 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | ||||| |||| || | || | ||| || ||| || || ||| Sbjct 766262 ATTCCTCCTCTGAGACGAAGGACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATCG 766321 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | ||| || | ||||||||||| || || | ||| || || || || Sbjct 766322 GACAAGGTGCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGT 766381 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| || |||| ||| | ||| || || || |||| ||| Sbjct 766382 GGGATTCCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAAGCCTCG 766441 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || ||||| || || || || || || ||||| || |||||| Sbjct 766442 ACTTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCATT 766492 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| || | |||| || || ||| ||||||||||| | || | | | Sbjct 765312 CGAAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCA 765371 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| ||||| || || || ||||| || || || || || |||||||| ||| Sbjct 765372 TCCTCCAATTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTA 765431 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | || ||| ||||| || | || || || ||||| ||| Sbjct 765432 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTTCGACCTCGAGAGTGATA 765491 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || ||||| Sbjct 765492 GTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 765526 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| |||||||| || || |||| || | |||| ||| || || ||||||||| Sbjct 764786 ATACCTCCTCTCAAGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCG 764845 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | ||| || | || |||||||| || || || | ||||||||| || Sbjct 764846 GACAAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGT 764905 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || ||||| || |||| || | || || || ||||| | || Sbjct 764906 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCG 764965 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | || || || || || || || || || || || || ||||| Sbjct 764966 ACTTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 765015 >seq24 Length=791117 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| || | |||| || || ||| ||||||||||| | || | | | Sbjct 463193 CGAAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCA 463252 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| |||||||| || || | ||| || || || || || |||||||| ||| Sbjct 463253 TCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTA 463312 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | || ||| ||||| || | | ||||| ||||| ||| Sbjct 463313 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACTTCGAGAGTGATA 463372 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || ||||| Sbjct 463373 GTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 463407 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| || | |||| || || ||| ||||||||||| | || | | | Sbjct 463822 CGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCA 463881 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| |||||||| || || | ||| || || || || || |||||||| ||| Sbjct 463882 TCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTA 463941 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | || ||| ||||| || | | ||||| ||||| ||| Sbjct 463942 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACTTCGAGAGTGATA 464001 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || ||||| Sbjct 464002 GTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 464036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899617233027600