Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq19 86.0 9e-12 >seq19 Length=917137 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || | || ||||| || || || | |||||||| | ||| Sbjct 766036 AATGCAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTTGAAGTCGAGGCTTC 765977 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||||| ||| || || || || || ||||| || || ||||| || Sbjct 765976 CGATACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCA 765917 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 ||||||||||||| ||||||||| Sbjct 765916 GCAAAGATTGATTTTCGCCGGTAAG 765892 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | |||||||| ||||| || | || ||||||| ||| Sbjct 765526 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAGGTCGAAGCCTCT 765467 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||||| || || || ||||| ||||| || || ||||| || Sbjct 765466 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 765407 Query 155943 CAAAGATTGATTTATGCCGGTAAGCA 155968 ||||||||||| | || || ||||| Sbjct 765406 CAAAGATTGATCTTCGCTGGAAAGCA 765381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731841764538000