Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq486 145 2e-29 seq178 140 1e-27 seq17 125 2e-23 seq10 98.7 3e-15 >seq486 Length=71490 Score = 145 bits (160), Expect = 2e-29 Identities = 224/320 (70%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 289024 TTTTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 ||| | || |||||||||||||| |||||||| | | ||| || ||||| | || || Sbjct 49025 TTTCTTCCTACAGCATCAATTTCATCAATGAACAAAATACATGGTGAATTCTTCCTGGCC 49084 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 || | ||| | || | || | | || ||| | |||||| ||||||| | |||||| Sbjct 49085 ATGGAAAACATATCACGAACTCTTGCTGGTCCGACTCCAACAAACATTTCGAGAAATTCT 49144 Query 289144 GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 || | || || |||||||| |||||||||||| |||||| |||| | || |||||| Sbjct 49145 GATCCAGAGACAGTAATGAATGGTACATTTGCTTCTCCTGCTGTTGCCTTAGCTAGAAGT 49204 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 || || || ||||| |||||||| ||| | | |||| || || | ||| || ||| Sbjct 49205 GTTTTTCCCGTTCCCGGTGGTCCAGTTAAAATAGCTCCTTTCGGAATTTTGGCACCAAGG 49264 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 || || | | || | || || || | |||| ||| || |||| ||| ||| Sbjct 49265 TCTTTGTACTGTTGTGGATTTTTCAAGAAATTGACAAACTCCATAATTTCAATTTTAGCC 49324 Query 289324 TCATCACATCCTGCTACATC 289343 || ||||| || |||||||| Sbjct 49325 TCTTCACAACCAGCTACATC 49344 >seq178 Length=305597 Score = 140 bits (154), Expect = 1e-27 Identities = 223/320 (70%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 289024 TTTTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 ||| | || |||||||||||||| || ||||| | | ||| || ||||| | || || Sbjct 261430 TTTCTTCCTACAGCATCAATTTCATCGATGAACAAAATACATGGTGAATTCTTCCTGGCC 261371 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 || | ||| | || | || | | || ||| | |||||| ||||||| | |||||| Sbjct 261370 ATGGAAAACATATCACGAACTCTTGCTGGTCCGACTCCAACAAACATTTCGAGAAATTCT 261311 Query 289144 GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 || | || || |||||||| |||||||||||| |||||| |||| | || |||||| Sbjct 261310 GATCCAGAGACAGTAATGAATGGTACATTTGCTTCTCCTGCTGTTGCCTTAGCTAGAAGT 261251 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 || || || ||||| |||||||| ||| | | |||| || || | ||| || ||| Sbjct 261250 GTTTTTCCCGTTCCCGGTGGTCCAGTTAAAATAGCTCCTTTCGGAATTTTGGCACCAAGG 261191 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 ||| || | | || | || || || | |||| ||| || ||| ||| ||| Sbjct 261190 TCCTTGTACTGTTGTGGATTTTTCAAGAAATTGACAAACTCCATAATCTCAATTTTAGCC 261131 Query 289324 TCATCACATCCTGCTACATC 289343 || ||||| || |||||||| Sbjct 261130 TCTTCACAACCAGCTACATC 261111 >seq17 Length=1338299 Score = 125 bits (138), Expect = 2e-23 Identities = 315/478 (66%), Gaps = 3/478 (1%) Strand=Plus/Plus Query 156026 TGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCG 156082 |||||| ||||| ||||| || ||| | |||| || || ||||| ||||| || Sbjct 168209 TGGCTCAAGATAGATAGCGAATGCACCTGGACGCTTGTTTCCTCCTTGATCGACATAACG 168268 Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 |||||| || ||| | |||| ||||| ||||||| ||||||||||| ||||||||||| Sbjct 168269 AGCAGTGTTGTTGTAAACACGGAGCATTGGAATAAGTCCATTGGAAGTTCCATTGGTTCC 168328 Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202 | || || || | | |||| || || | || || ||||| || || | | Sbjct 168329 GGCGATGACTGATCCGGTGGCACGAATCTTGTGGACATTGAGACCAATTCCTCCAGCACT 168388 Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262 || || || | || || | || | ||| | | | || || ||| ||||| || Sbjct 168389 CTTCGAGATGAGTGCACACTGTTTCAGAGTGTCGTAGATTCCGAGAATCGAATCTTCGCT 168448 Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGT 156322 ||| | || | ||||||| | || || || ||||||| |||||| || || Sbjct 168449 CATCGTGAGCAAGAAGCACGATGACATCTGTGGACGACACGTTCCAGAGTTGAAGAGAGT 168508 Query 156323 AGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTC 156382 |||| |||||| | | ||| | ||||| ||| |||||| || | | Sbjct 168509 TGGTGATGCATGTGTCATGTACCGTTCCGACATCAAATTGTATGTTTCGATGGCGGCAGC 168568 Query 156383 AAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTAC 156442 || | | |||||||| | ||||| ||| | |||| |||| |||||||||||||| || Sbjct 168569 AATGTCATTTCCGTGAATTCCGATAGCGACACGCATCAACATTTGCTGAGGACGCTCAAC 168628 Query 156443 AATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAA 156500 || || | ||| |||||||| | || || || || || || ||||| ||| Sbjct 168629 AACTTCTTTGTTAATCTTGAGAAGGTAGGACCGCTCGAGTGTCTTGAATCCGAAGTAA 168686 >seq10 Length=1639106 Score = 98.7 bits (108), Expect = 3e-15 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| |||| || || ||||| |||||||| || || | ||||| ||| Sbjct 1107939 ATTGTCATACGAGATGGAACGGCGTGAGGATTAATGATGATATCTGGAGTGAGTCCTTCA 1107880 Query 251905 GCAGTGAAGGGCATATCCTTTTCC--TCAATA-ATGTTTCCAATAGTTCCCTTTTGTCCG 251961 |||||||| ||||| || |||| || ||| ||| | || || || || || || ||| Sbjct 1107879 GCAGTGAACGGCATGTC---TTCCTGTCGATACATGATACCCATCGTACCTTTCTGACCG 1107823 Query 251962 TGACGAGAACTGAACTTATCACCAAT 251987 ||||||||| |||||||||||||| Sbjct 1107822 TGACGAGAAGCAAACTTATCACCAAT 1107797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471755275423785