Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq19 152 5e-32 seq157 134 1e-26 seq156 134 1e-26 seq24 116 3e-21 >seq19 Length=917137 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || | ||||| |||||| || Sbjct 765015 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 764956 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || ||||| || || |||||| Sbjct 764955 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 764896 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| || ||||| |||||| | | | |||| || |||||| Sbjct 764895 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCTTGTCCGACTATAAC 764836 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || |||||||| | || ||| | ||||| Sbjct 764835 ATCCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGCTTGAGAGGAGG 764789 Score = 152 bits (168), Expect = 5e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || ||||| || || ||||| || || | Sbjct 766491 ATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAGGCTTCT 766432 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| |||||||| || || || || Sbjct 766431 GACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 766372 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| ||||| |||||||| |||||| | | | |||| ||||| ||| Sbjct 766371 CAAAGACTCATCTTCGCCGGAAAACAGCTCGAGGATGGCCGCACCTTGTCCGATTACAAC 766312 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||| ||||| || |||||||| Sbjct 766311 ATTCAAAAGGAGTCGACTCTTCACTTGGT 766283 Score = 149 bits (164), Expect = 6e-31 Identities = 161/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || ||||| || || ||||| ||||| || Sbjct 766263 ATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAAGCTTCC 766204 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| ||||| |||||||| || ||||| || || ||||| Sbjct 766203 GACACAATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 766144 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATAA 24882 || | | ||||| ||||| || ||| |||||||| || |||| ||| || || || Sbjct 766143 CAGAGACTCATCTTCGCCGGAAAGCAGTTGGAGGATG-GACGCACATTGTCTGACTACAA 766085 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||||||| ||||| || || |||||| Sbjct 766084 CATTCAAAAGGAGTCGACTCTCCATTTGGTG 766054 Score = 141 bits (156), Expect = 8e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || | ||||| |||||| || Sbjct 764050 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 763991 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || ||||| || || |||||| Sbjct 763990 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAA 763931 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| || ||||| |||||| | | | |||| || |||||| Sbjct 763930 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCTTGTCCGACTATAAC 763871 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||| ||||| || || Sbjct 763870 ATCCAGAAGGAGTCGACCCTCCA 763848 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || | ||||| |||||| || Sbjct 765754 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 765695 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || ||||||||||| || ||||| || || ||||| Sbjct 765694 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAGGGAATTCCACCAGATCAG 765635 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| || || || || |||||||| |||| | || ||||| || Sbjct 765634 CAACGTCTCATCTTCGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCGGATTACAAT 765575 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| || || || || |||||| | || | || ||||| Sbjct 765574 ATCCAAAAGGAGTCCACTCTTCATTTGGTGCTCCGTCTTCGTGGAGG 765528 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || |||||||| || || || Sbjct 764559 ATGCAGATCTTCGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTTGAGGCTTCC 764500 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||| |||||||| || ||||| || || ||||| Sbjct 764499 GACACCATTGAAAACGTGAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 764440 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| || || || || |||||||| |||| | || || || ||| Sbjct 764439 CAACGTCTCATCTTCGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCGGACTACAAC 764380 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || |||||||| | || | || ||||| Sbjct 764379 ATCCAGAAGGAGTCGACTCTCCACTTGGTCCTTCGCCTCCGTGGAGG 764333 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || ||||| || ||||| || |||||| | Sbjct 765526 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAGGTCGAAGCCTCT 765467 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| || || |||||||| || || || || Sbjct 765466 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 765407 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||| || || || || |||||||| | | | | || || |||||| Sbjct 765406 CAAAGATTGATCTTCGCTGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 765347 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || |||||||| | || | || ||||| Sbjct 765346 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTTCGTCTTCGTGGAGG 765300 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || | ||||| |||||| || Sbjct 764787 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 764728 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||| |||||||| || || || || Sbjct 764727 GACACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 764668 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| ||||| || || |||||||| | | | || ||||| ||| Sbjct 764667 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGCCGCACTCTCTCCGATTACAAC 764608 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || ||||||||||| || || || Sbjct 764607 ATCCAAAAGGAATCCACCCTTCA 764585 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || | ||||| || ||| || Sbjct 765298 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAAGTCGAGGCCTCC 765239 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| |||||||| || || |||||| Sbjct 765238 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAA 765179 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 |||||| | ||||||||||| || Sbjct 765178 CAACGTCTTATCTTTGCCGGTAA 765156 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || || ||||| || || || || | || || || ||| | Sbjct 764331 ATGCAAATCTTCGTTAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTTGAGGCCTCA 764272 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| || || ||||| Sbjct 764271 GACACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 764212 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||| | | ||||||||||| || Sbjct 764211 CAAAGACTTATCTTTGCCGGTAA 764189 >seq157 Length=243809 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| |||||||| |||||||| || ||| || Sbjct 217987 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCC 218046 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| |||||||| || || ||||| Sbjct 218047 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 218106 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||||| ||||| || || || |||||| | | | || || || ||| Sbjct 218107 CAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 218166 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| ||||| || |||||||| | || | || ||||| Sbjct 218167 ATCCAAAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCCGTGGAGG 218213 >seq156 Length=445966 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| |||||||| |||||||| || ||| || Sbjct 424560 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCC 424501 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| |||||||| || || ||||| Sbjct 424500 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 424441 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||||| ||||| || || || |||||| | | | || || || ||| Sbjct 424440 CAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAAC 424381 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| ||||| || |||||||| | || | || ||||| Sbjct 424380 ATCCAAAAGGAGTCGACTCTCCACTTGGTTCTCCGTCTCCGTGGAGG 424334 >seq24 Length=791117 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || ||||| || |||||||| | |||| | Sbjct 463407 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCT 463348 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| || || |||||||| || || || || Sbjct 463347 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 463288 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| ||||| || || |||||||| | | | | || || |||||| Sbjct 463287 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 463228 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || |||||||| | || | || ||||| Sbjct 463227 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTTCGTCTCCGTGGAGG 463181 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || ||||| || |||||||| | |||| | Sbjct 464036 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCT 463977 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| || || |||||||| || || || || Sbjct 463976 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 463917 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| ||||| || || |||||||| | | | | || || |||||| Sbjct 463916 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 463857 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || |||||||| | || | || ||||| Sbjct 463856 ATTCAAAAGGAATCTACTCTTCACTTGGTCCTTCGTCTTCGTGGAGG 463810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449879013605400