Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq30 86.0 5e-12 seq19 86.0 5e-12 >seq30 Length=1219974 Score = 86.0 bits (94), Expect = 5e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 34320 AGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAG 34379 |||||| || || ||||| | |||| |||||||| ||| || ||||| || | Sbjct 788775 AGTCTCTGGATTCTCACAAGACTTGCACAGAACAAACTTCTTGATAAATCCATCGAGAAT 788716 Query 34380 GTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATC 34439 ||||| | || || ||| || |||||||| || | || ||||||||| ||| Sbjct 788715 ATCCTGAAGTTTGTTGGCGTCATGTTCTCCGTTGACAATATAACGCTCGTTTTTGGCATC 788656 Query 34440 GACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486 || | ||||| || || |||||||| |||||||||||||| |||| Sbjct 788655 GAAATTTGTTTGTGCTCCGAGCTCGCAACCGAAGTACTTTGTTGGGT 788609 >seq19 Length=917137 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || |||||||| ||| | ||||| || || || || | ||| ||| || Sbjct 766492 AATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAGGCTTC 766433 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | || ||| ||||| ||||| ||||| | || || || Sbjct 766432 TGACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCA 766373 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||||| || | || || |||||||| ||||||| | | || || | |||||||| Sbjct 766372 GCAAAGACTCATCTTCGCCGGAAAACAGCTCGAGGATGGCCGCACCTTGTCCGATTACAA 766313 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||||||| || || || | ||| |||| Sbjct 766312 CATTCAAAAGGAGTCGACTCTTCACTTGGT 766283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412824970869365