Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq19 152 3e-32 seq24 134 9e-27 seq157 123 2e-23 seq156 123 2e-23 >seq19 Length=917137 Score = 152 bits (168), Expect = 3e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| ||||| | || |||| ||||| ||| ||||||||| ||||||||||| || Sbjct 764789 CCTCCTCTCAAGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAC 764848 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | |||| |||| || || ||||||||||||||||||| || || || ||| | || Sbjct 764849 AAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGG 764908 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || |||||| | || | || ||| ||||| Sbjct 764909 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACT 764968 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| ||||||||||| ||||||||||| || ||||||||||| Sbjct 764969 TCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 765015 Score = 141 bits (156), Expect = 6e-29 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | | ||||||| ||||| || |||||| |||||||| || || | Sbjct 766263 TTCCTCCTCTGAGACGAAGGACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATCGG 766322 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | |||| |||| || || || |||||||||||||| |||| |||||||||| | | Sbjct 766323 ACAAGGTGCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTG 766382 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || |||||||| | || || ||| || || || || | ||| ||||| Sbjct 766383 GGATTCCTTCCTTGTCTTGGATCTTGGCTTTAAC--ATTCTCGATGGTGTCAGAAGCCTC 766440 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| |||| || || |||||||| ||||| ||||| |||||||||||||| Sbjct 766441 GACTTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766491 Score = 134 bits (148), Expect = 9e-27 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||||||||| || | | |||| |||| || || |||||||||||||| Sbjct 763859 CTCCTTCTGGATGTTATAGTCGGACAAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 763918 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || || || ||| | || | ||||||||||| | || || |||||| Sbjct 763919 GATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 763978 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || ||| ||||| || | ||| ||||||||||| ||||||||||| || Sbjct 763979 CTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCAC 764038 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 764039 GAAGATCTGCAT 764050 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| ||||| || ||||| || || || || |||| |||| Sbjct 764576 AGGACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 764635 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||||||||||||| |||| |||||||||| | || | || |||||||| Sbjct 764636 TCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 764695 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | || ||| ||||| || | ||| |||||| Sbjct 764696 TGGATCTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTC 764755 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| || ||||||||||| Sbjct 764756 TTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 764787 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||| |||||||||||||| || ||| |||| |||| Sbjct 765315 AGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCC 765374 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||| |||||||||| || |||||||||| | || | || ||||| || Sbjct 765375 TCCAATTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCC 765434 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| ||| ||||| || | || || ||| Sbjct 765435 TGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTTCGACCTCGAGAGTGATAGTC 765494 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || || |||||||| Sbjct 765495 TTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 765526 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| |||| ||| |||||| || || || || ||||| || | | |||| Sbjct 765543 AGCACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAAAGAGTTCTTCCATCC 765602 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||| |||||||| || |||||||| ||| | || | ||||||||||| Sbjct 765603 TCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATTCCCTCCTTGTCT 765662 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| |||||| | | || | || ||| ||||| || | ||| |||||| Sbjct 765663 TGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTC 765722 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| || ||||||||||| Sbjct 765723 TTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 765754 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | || ||||||||| ||||| |||||||| || | | |||| Sbjct 764348 AGGACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCC 764407 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||| |||||||| || |||||||| ||| | || | ||||||||||| Sbjct 764408 TCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGGATTCCCTCCTTGTCT 764467 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | | || | || ||||| || || | ||| |||||| Sbjct 764468 TGAATCTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACTTCGAGGGTGATGGTC 764527 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | |||||| || ||||||||||| Sbjct 764528 TTTCCAGTCAAGGTCTTGACGAAGATCTGCAT 764559 Score = 125 bits (138), Expect = 5e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| ||||| || | |||| |||| |||| |||||||||||||| Sbjct 766072 CTCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCCTCCAACTGCTTTCCGGCGAA 766131 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||| ||||| ||| | || | ||||||||||| | || || |||||| Sbjct 766132 GATGAGTCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGCTTTGACATT 766191 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || || ||||| |||| || || |||||||| ||||| ||||| || Sbjct 766192 TTCGATTGTGTCGGAAGCTTCGACTTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGAC 766251 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 766252 AAAGATCTGCAT 766263 Score = 105 bits (116), Expect = 4e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || || | || |||| || || |||||||||||||| Sbjct 766528 CTCCTTCTGGATGTTGTAGTCAGACAGAGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAA 766587 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || ||||| |||||| | || | |||||||| || | || || ||||| | Sbjct 766588 GATGAGACGTTGTTGGTCTGGTGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGAC--A 766645 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || ||||| || || | ||| ||||| ||||| || | || || Sbjct 766646 TTCTCGATGGTGTCGGAAGCCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAACGTTTTG 766705 Query 34964 ACAAAGATCTGCATGATAG 34982 || ||||| |||||||||| Sbjct 766706 ACGAAGATTTGCATGATAG 766724 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| |||||||| |||| || |||||||||| | || | || |||||||| | || || Sbjct 765892 CTTACCGGCGAAAATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTT 765951 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 ||||||| | || | || |||||||| |||| || ||||||||||| || Sbjct 765952 GGCTTTGACGTTCTCAATGGTATCGGAAGCCTCGACTTCAAGAGTGATGGTCTTTCCGGT 766011 Query 34954 GAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| || ||||| ||||| Sbjct 766012 GAGGGTCTTCACGAAGATTTGCAT 766035 >seq24 Length=791117 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||| |||||||||||||| || ||| |||| |||| Sbjct 463196 AGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCC 463255 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||||||||||||| |||| |||||||||| | || | || ||||| || Sbjct 463256 TCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCC 463315 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| ||| |||| || | || || ||| Sbjct 463316 TGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACTTCGAGAGTGATAGTC 463375 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || || |||||||| Sbjct 463376 TTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 463407 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| || ||||| |||||||||||||| || ||| |||| |||| Sbjct 463825 AGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCATCC 463884 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||||||||||||| |||| |||||||||| | || | || ||||| || Sbjct 463885 TCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCC 463944 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| ||| |||| || | || || ||| Sbjct 463945 TGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACTTCGAGAGTGATAGTC 464004 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || || |||||||| Sbjct 464005 TTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 464036 >seq157 Length=243809 Score = 123 bits (136), Expect = 2e-23 Identities = 146/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| ||||| || || | || |||| || ||||||||||||||||| Sbjct 218178 CTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAA 218119 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||||| |||||| ||| | || | || |||||||| | || || ||||| | Sbjct 218118 GATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGAC--A 218061 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || ||||||||| || | ||| || ||||| ||||| || ||||| Sbjct 218060 TTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGAGTCTTG 218001 Query 34964 ACAAAGATCTGCATGA 34979 || ||||| ||||||| Sbjct 218000 ACGAAGATTTGCATGA 217985 >seq156 Length=445966 Score = 123 bits (136), Expect = 2e-23 Identities = 146/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| ||||| || || | || |||| || ||||||||||||||||| Sbjct 424369 CTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAA 424428 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||||| |||||| ||| | || | || |||||||| | || || ||||| | Sbjct 424429 GATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGAC--A 424486 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || ||||||||| || | ||| || ||||| ||||| || ||||| Sbjct 424487 TTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGAGTCTTG 424546 Query 34964 ACAAAGATCTGCATGA 34979 || ||||| ||||||| Sbjct 424547 ACGAAGATTTGCATGA 424562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325679681195795