Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq22 93.3 1e-14 >seq22 Length=1044653 Score = 93.3 bits (102), Expect = 1e-14 Identities = 168/238 (71%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 35529 AGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGG 35588 ||||||| || ||| || | ||| ||||| ||| ||||||| | | ||||| | Sbjct 397754 AGCCGGGGTATGTCGTACTCCCCAGCGTTGAAATCGACAAACAGTGCGCCGTCGTCGGAG 397695 Query 35589 CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTG 35648 |||||||||| |||| ||| ||| || | || | ||||||||| | ||| || Sbjct 397694 TCTCATCGCGCCAGGACTGGTTGTCTTATGCATGTGCCTTTCTCCGGAAT-CTCTTGCTG 397636 Query 35649 CGCACGTATTCG-GTGAACGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCA 35707 ||||||| |||| ||||||||| |||| ||||| || | ||||||| | |||| Sbjct 397635 CGCACGT-TTCGAGTGAACGCATTATGATGACGCCGG--CTGCTTATGACCGAATTGTCC 397579 Query 35708 CCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGA 35765 || ||| || || | ||||||||||||||| | | ||| | ||||||||||| Sbjct 397578 TACTGTGAACTGCTGCATCGAATGACGGATGGCTGG-CACGGTACG-ATCCCGCCTGA 397523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127099011565200