Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq19 141 7e-29 seq24 105 5e-18 seq157 95.1 9e-15 seq156 95.1 9e-15 >seq19 Length=917137 Score = 141 bits (156), Expect = 7e-29 Identities = 173/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG- 29617 |||||| || | ||| ||||||||||| || || || || ||||||||||| || || | Sbjct 766036 TCCTCCTCTGAGACGGAGCACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGA 766095 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 |||| ||||| ||| || | || || || || | || | ||| |||||||| || | Sbjct 766096 CAAT-GTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 766154 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 | || ||||| |||||||| ||| || | ||||||| |||| | ||||| ||| ||| Sbjct 766155 GGATTCCCTCCTTGTCTTG-AATCTTGGCTTTGACATTTTCGATTGTGTCGGAAGCTTCG 766213 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| || ||||| || || || | || || ||||| ||||||||| Sbjct 766214 ACTTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCATT 766264 Score = 138 bits (152), Expect = 9e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| || ||||| ||||| || || || ||||||||||| ||||| | Sbjct 766264 TCCTCCTCTGAGACGAAGGACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGA 766323 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| ||||| ||||| || || | || | ||||||||| || || || Sbjct 766324 CAAGGTGCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGG 766383 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | || ||| ||| | || | ||||||||| || || Sbjct 766384 GATTCCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAAGCCTCGAC 766443 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||| || ||||| || || || | || || ||||| ||||||||| Sbjct 766444 TTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCATT 766492 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| |||||||||||||| ||||| || ||||| || || ||||||| | Sbjct 765528 CCTCCACGAAGACGGAGCACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAA 765587 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | ||| || ||||| | || | | ||||||||| || ||| Sbjct 765588 AGAGTTCTTCCATCCTCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGA 765647 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | ||| ||||| |||| | ||||| || ||| ||| Sbjct 765648 ATTCCCTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACT 765707 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | || || || || ||||| | ||| || || || ||||||||| Sbjct 765708 TCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 765755 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||| ||||| || ||||| |||||||||||||| || | Sbjct 765300 CCTCCACGAAGACGAAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAG 765359 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || | ||| || ||||| | |||||||||||||| || || || Sbjct 765360 AGGGTGCGACCATCCTCCAATTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGTGGG 765419 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || || || | || | || ||||| ||| || Sbjct 765420 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTTCGACC 765479 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| || ||||| | || || || || |||||||| Sbjct 765480 TCGAGAGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 765526 >seq24 Length=791117 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 ||| ||||| | | ||| || ||||| ||||| || ||||| |||||||||||||| || Sbjct 463177 TTGCCCTCCACGGAGACGAAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTC 463236 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 | | ||||||| ||| || | ||| || || || | || | ||||||||| || || Sbjct 463237 GGAGAGGGTGCGACCATCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGG 463296 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735 || || || || || || || | || || || | || | || ||||| | | Sbjct 463297 TGGGATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCC 463356 Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| ||||| || ||||| | || || || || |||||||| Sbjct 463357 GACTTCGAGAGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 463407 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||| ||||| || ||||| |||||||||||||| || | Sbjct 463810 CCTCCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGAATGTTATAGTCGGAG 463869 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || | ||| || || || | || | ||||||||| || || || Sbjct 463870 AGGGTGCGACCATCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 463929 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || || || | || | || ||||| | | ||| Sbjct 463930 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGCTCCGACT 463989 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| || ||||| | || || || || |||||||| Sbjct 463990 TCGAGAGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 464036 >seq157 Length=243809 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||| || || || || || ||||| ||||| || || | Sbjct 218213 CCTCCACGGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAG 218154 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| |||||||| || || || | |||| |||||||||||| || ||| Sbjct 218153 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGA 218094 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || |||||| | || | || || || || ||| Sbjct 218093 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 218034 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| || || || | || || || || || ||||| Sbjct 218033 TCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 217987 >seq156 Length=445966 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||| || || || || || ||||| ||||| || || | Sbjct 424334 CCTCCACGGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAG 424393 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| |||||||| || || || | |||| |||||||||||| || ||| Sbjct 424394 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGA 424453 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || |||||| | || | || || || || ||| Sbjct 424454 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 424513 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| || || || | || || || || || ||||| Sbjct 424514 TCGAGGGTAATAGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 424560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385203683491005