Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq1827 84.2 3e-11 >seq1827 Length=14047 Score = 84.2 bits (92), Expect = 3e-11 Identities = 175/255 (69%), Gaps = 23/255 (9%) Strand=Plus/Minus Query 152498 TTTTGTCTCAGTAGCTCAGATGGATAGAGCAATTCACTTCTAATGAATTGGTCGGGGGTT 152557 ||||| ||| |||||||| ||| ||||||| | |||| |||| | |||| |||| Sbjct 7031 TTTTGAGTCATTAGCTCAGTTGG-TAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTT 6973 Query 152558 CGAGTCCCTCCTGAGACGCC-------TTGTCGGTA-TGGCGGAATTGGTAGACGCGCTG 152609 |||| || || ||| | || || |||| |||||||||||| |||||||| Sbjct 6972 CGAGCCCTTCATGACTCACCATTATATTTTGCGGTCGTGGCGGAATTGGCAGACGCGCAC 6913 Query 152610 GTTTTAGGTACCAGTGTCTTA---TGACGTGGAGGTTCAAGTCCTCT-TACCGACAC--- 152662 | || |||| | ||| || ||||||||||| |||||||| |||| ||| Sbjct 6912 GGTTCAGGTCCGTGTGGGCTAACCCCCCGTGGAGGTTCGAGTCCTCTCGACCG-CACCAT 6854 Query 152663 -----TCGCTCGAATAGCTCAGAGGTAGAGCACCTCCTTTACACGGAGATTGTCGGGGGT 152717 | || | | |||||| ||||||||| | |||| || || || |||| |||| Sbjct 6853 ATGTTTTGCGGAAGTGGCTCAGCGGTAGAGCATCGCCTTGCCAAGGCGAGGGTCGCGGGT 6794 Query 152718 TCGA-TCCCCTCTTC 152731 |||| |||| ||||| Sbjct 6793 TCGATTCCCGTCTTC 6779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605642178373800