Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq19 114 1e-20 seq157 93.3 4e-14 seq156 93.3 4e-14 seq24 86.0 6e-12 >seq19 Length=917137 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || || || || ||||||||| | ||| | | | ||||| | | Sbjct 764584 ATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAGAGAGTGCGGCCA-TCCTCCAATT 764642 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | ||||| | |||||||| || ||||| ||||||||||| ||||| Sbjct 764643 GCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCT 764702 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | |||| ||||||| || || || || | ||||| ||| || |||| Sbjct 764703 TAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGG 764762 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||| || ||||| |||||||| Sbjct 764763 TCAAAGTCTTGACGAAGATCTGCAT 764787 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || || || ||| || ||| | | | |||||||||| Sbjct 763847 ATGGAGGGTCGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCGGCCA-TCCTCGAGCT 763905 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || | ||||| || || || ||||| || |||||||| ||||| Sbjct 763906 GCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCT 763965 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||| | ||||||| || || || || | ||||| ||| || |||| Sbjct 763966 TGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGG 764025 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || ||||| |||||||| Sbjct 764026 TGAGGGTCTTCACGAAGATCTGCAT 764050 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || || || ||| || ||| | | | |||||||| Sbjct 764810 AAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCGGCCA-TCCTCGAG 764868 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || | ||||| || || || ||||| || |||||||| ||| Sbjct 764869 CTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGAT 764928 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | ||||||| || || || || | ||||| ||| || || Sbjct 764929 CTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCC 764988 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || ||||| |||||||| Sbjct 764989 GGTGAGGGTCTTCACGAAGATCTGCAT 765015 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || || || | | | |||||||||||||| || Sbjct 766523 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTCCGTCCA-TCCTCGAGCTGCTTTCC 766581 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || || ||||| || || || || ||||| || |||||| ||| Sbjct 766582 GGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCCTCCTTATCCTGGATCTTGGCCTT 766641 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||||| | |||||| || | ||||| |||||| || |||| || Sbjct 766642 GACATTCTCGATGGTGTCGGAAGCCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAACGT 766701 Query 133643 TTTTACGAAAATCTGCATG 133661 ||| ||||| || |||||| Sbjct 766702 TTTGACGAAGATTTGCATG 766720 Score = 102 bits (112), Expect = 8e-17 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || || ||||||||| || ||| | | | ||||||||||| || || Sbjct 766295 GTCGACTCCTTTTGAATGTTGTAATCGGACAAGGTGCGGCCA-TCCTCGAGCTGTTTTCC 766353 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| | |||||||| || ||||| ||||||||||| |||| || |||| Sbjct 766354 GGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATC-TTGGCTT 766412 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | | ||| || || | |||| || || ||||| |||| Sbjct 766413 TAACATTCTCGATGGTGTCAGAAGCCTCGACTTCAAGTGTGATAGTCTTTCCGGTGAGAG 766472 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 766473 TCTTGACAAAGATCTGCAT 766491 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || || || || || || || ||||| ||||||||||| ||||| Sbjct 765155 CTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTT 765214 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||||| ||||||| || ||| || || | ||||| ||| || ||||| Sbjct 765215 GGCCTTGACATTCTCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTTTCCGGT 765274 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||| || ||||| |||||||| Sbjct 765275 CAAAGTCTTGACGAAGATCTGCAT 765298 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | |||||||| || || ||||||||||| | || ||||| | Sbjct 765549 AAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAAAGAGTTCTTCCATCCTCCAAT 765608 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | ||||| || ||||| || || || || || |||||||| ||| Sbjct 765609 TGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATTCCCTCCTTGTCTTGGATT 765668 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||||| || || || || | ||||| ||| || || Sbjct 765669 TTAGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCA 765728 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| |||||||| Sbjct 765729 GTGAGGGTCTTGACGAAGATCTGCAT 765754 >seq157 Length=243809 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||| ||||| || ||| | || || | ||||| || || || || ||||||||| Sbjct 218141 TCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTG 218082 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||| | || |||| || ||| || |||| ||| | Sbjct 218081 TCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATA 218022 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || || || |||||||| || ||||| || |||||| || Sbjct 218021 GTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGACT 217983 >seq156 Length=445966 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||| ||||| || ||| | || || | ||||| || || || || ||||||||| Sbjct 424406 TCCTCGAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTG 424465 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||| | || |||| || ||| || |||| ||| | Sbjct 424466 TCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATA 424525 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || || || |||||||| || ||||| || |||||| || Sbjct 424526 GTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGACT 424564 >seq24 Length=791117 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || || || || || || ||| | ||| ||| | ||||| | Sbjct 463202 AAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCGGAGAGGGTGCGACCA-TCCTCCAA 463260 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | ||||| | |||||||| || ||||| |||||||| || ||| Sbjct 463261 TTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCCTGGAT 463320 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCC-ACGTCGACGGTGACGGTTTTGC 133632 ||| ||| | | ||||| || || | || |||| || |||| |||| || || | Sbjct 463321 CTTGGCCTTCACGTTCTCAATGGTATCAGAGG-CTCCGACTTCGAGAGTGATAGTCTTTC 463379 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| || |||||||||||||| Sbjct 463380 CAGTGAGAGTCTTGACGAAAATCTGCAT 463407 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| | ||||| || ||| | ||||| | |||||||| || ||||| |||||||| Sbjct 463882 TCCTCCAATTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTA 463941 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCC-ACGTCGACGGTGAC 133624 || |||||| ||| | | ||||| || || | || |||| || |||| |||| Sbjct 463942 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGG-CTCCGACTTCGAGAGTGAT 464000 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| || |||||||||||||| Sbjct 464001 AGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 464036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483400828678200