Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq280 116 9e-21 seq17 105 2e-17 seq69 100 7e-16 seq149 95.1 3e-14 >seq280 Length=203180 Score = 116 bits (128), Expect = 9e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 305316 ATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGG 305375 |||| || ||| ||||| |||||| | |||||||| ||||||||||| || || ||| Sbjct 46528 ATGATAACGATGTTGTTCTTTTCAATCGTCAACCATCTCTGCATAAAATCTCCATTATGA 46587 Query 305376 CTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGC 305435 |||| | ||||| | ||||| ||||| || || || | | |||||||||| | Sbjct 46588 GTCATCGTGCTAAAGTTATGCCTGGAAGAACATTCCGCTTTAACGAATGTGCTTGTACTC 46647 Query 305436 CTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 | ||||| || ||||| |||||||| |||||||| ||||| |||| || Sbjct 46648 CATATAACGCAGATTTCGATGGAGACGAAATGAACTTGCATTTACCACA 46696 >seq17 Length=1338299 Score = 105 bits (116), Expect = 2e-17 Identities = 349/541 (65%), Gaps = 15/541 (3%) Strand=Plus/Minus Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 |||| |||||||| || ||||| | ||||| || || || ||||| ||| |||| ||| Sbjct 168627 TTGAGCGTCCTCAGCAAATGTTGATGCGTGTCGCTATCGGAATTCACGGAAATGACATTG 168568 Query 110422 AAGCTGTTATTGAATGTTA-----TGATGTATTAA-GTAAAAAGAAAGCTATTCATGCTA 110475 || | || ||| || |||||| || | | | || | ||||| Sbjct 168567 CTGCCGCCATCGAAACATACAATTTGATGTCGGAACGGTACATGACA------CATGCAT 168514 Query 110476 CTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAG 110535 | || || || || ||| | ||||| | | ||| || | || ||||| | || Sbjct 168513 CACCAACTCTCTTCAACTCTGGAACGTGTCGTCCACAGATGTCATCGTGCTTCTTGCTCA 168454 Query 110536 GAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTT 110595 || | ||| ||||| ||| || || || || |||| ||| | ||| || || | Sbjct 168453 CGATGAGCGAAGATTCGATTCTCGGAATCTACGACACTCTGAAACAGTGTGCACTCATCT 168394 Query 110596 CTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATA 110655 | || | |||||||||||||| | | || || | ||||| | | ||| || | Sbjct 168393 CGAAGAGTGCTGGAGGAATTGGTCTCAATGTCCACAAGATTCGTGCCACCGGATCAGTCA 168334 Query 110656 TCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACA 110715 |||| | | || || |||| | ||||||| |||||||| | | || | |||| ||| Sbjct 168333 TCGCCGGAACCAATGGAACTTCCAATGGACTTATTCCAATGCTCCGTGTTTACAACAACA 168274 Query 110716 CTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCG 110772 |||| ||||| ||||||| || ||| | || |||| ||||||||||| | Sbjct 168273 CTGCTCGTTATGTCGATCAAGGAGGAAACAAGCGTCCAGGTGCATTCGCTATCTATCTTG 168214 Query 110773 AACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAG 110832 | || ||||| | || | || || ||| | | || || ||||| || |||| Sbjct 168213 AGCCATGGCACGCCGACGTCTTCGAGTTCGTCGCTCTCCGCAAAAACACTGGCCCAGAAG 168154 Query 110833 AACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTG 110892 || | | || ||||| || || ||| | ||| || ||||| | ||||||||||||| Sbjct 168153 AAGAGCGCGCTCGTGACTTGTTCCTTGCCCTCTGGGTTCCAGATCTCTTCATGAAACGTG 168094 Query 110893 T 110893 | Sbjct 168093 T 168093 >seq69 Length=836810 Score = 100 bits (110), Expect = 7e-16 Identities = 161/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 167211 AAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTCATTC 167270 ||||||||| || || | || || |||| || | ||||||||||||||||| | | Sbjct 112498 AAAGAGCACAAAAGATTCTCATCAACATTCATCACTGCTCCAGCATTATCGAATTC-TCC 112440 Query 167271 GCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCATAACC 167329 || || ||||||||||| ||||||||||| ||| ||| | ||| |||||||| || Sbjct 112439 ACAGTAGTTTGGTGCTGAGAATACAGTAACCAATCCACGTCTTCCAAAGAATTCATATCC 112380 Query 167330 ATCTTCAACAACTTCATGGGCACGTATTACAA-GTTCAACTCCTAtttttttAAGAAAAT 167388 ||| || || |||| ||| | || | |||| | ||| ||| ||||| ||||| Sbjct 112379 ATCCTCCACTACTTGATGCCCTCGAACAACAATATCCAAATCCATTTTTTGCAAGAA--- 112323 Query 167389 TAGTTAAAGCACGT--AATCCAAATTTATAACTACAACCTCTTTCA 167432 | || ||| || | | ||| ||| |||||| |||||||||| Sbjct 112322 TTGTGCAAGAACATCCACTCCGAATACATAACTGACACCTCTTTCA 112277 >seq149 Length=436469 Score = 95.1 bits (104), Expect = 3e-14 Identities = 206/307 (67%), Gaps = 10/307 (3%) Strand=Plus/Plus Query 279833 TTTTCTAATTATGATGTTCATCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCA 279892 ||||||||| |||| | ||||||||||| | | | || || || ||||| | Sbjct 108394 TTTTCTAATCTTGATAACGAGCGTTCTATTCCATGTCTTGTCGACGGCTTCAAACCAGGA 108453 Query 279893 CAGCGTAAGATTATATTCAGTTGTTTCAAAAGA----AAATTGGTAAAG-GAAATTCGTG 279947 || ||||| || | ||| ||||||||| ||| | | || ||| |||| | Sbjct 108454 CAACGTAAAGTTTTGTTCGCTTGTTTCAAGAGAGCTGACAAGCGTGAAGTGAAA-----G 108508 Query 279948 TTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTC 280007 | ||||| | || || ||| |||||| | | | ||| |||||||| ||| |||| Sbjct 108509 TAGCTCAACTTGCCGGAGCTGTGGCAGAACTTTCTGCTTACCATCACGGAGAACAGTCTT 108568 Query 280008 TTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGC 280067 | || | ||||| |||||| ||||||||| | | ||| |||||| | || ||| Sbjct 108569 TGATGGGAACCATTGTTAATCTTGCTCAAGATTTTGTCGGTTCCAACAACGTCAACTTGC 108628 Query 280068 TTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAATGGAAAAGATCATGGTAGTGCTC 280127 | |||| || ||||| ||| ||||| |||| ||||||||| || | |||| Sbjct 108629 TCCTTCCAATCGGACAATTCGGTACTCGTCTTCAAGGAGGAAAAGATAGTGCTTCAGCTC 108688 Query 280128 GTTACAT 280134 ||||||| Sbjct 108689 GTTACAT 108695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186762544041105