Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq19 116 2e-21 >seq19 Length=917137 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | ||||||||| ||||| ||| ||||| |||||||| || || Sbjct 766037 CCTCCTCTGAGACGGAGCACCAAATGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAC 766096 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||||| | || ||||| || |||||||| || || | | |||||||||| | || Sbjct 766097 AATGTGCGTCCATCCTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGG 766156 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| || ||| | ||| || | |||||| | ||| || Sbjct 766157 ATTCCCTCCTTGTCTTGAATCTTGGCTTTGA-CATTTTCGATTGTGTCGGAAGCTTCGAC 766215 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 766216 TTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766263 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||||||| |||||| ||| ||||| || |||||||| || || || | | | Sbjct 765539 ACGGAGCACCAAATGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAAAGAGTTCTTCC 765598 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || |||||||| ||||| || || || | ||| ||||||||| | || | || || || Sbjct 765599 ATCCTCCAATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATTCCCTCCTT 765658 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||||| || | | | ||| ||||||| | ||| || || | |||| Sbjct 765659 GTCTTGGATTTTAGCCTTGA-CGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGA 765717 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || | || || || ||||||||||| Sbjct 765718 TGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 765754 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | ||||| || ||||| ||| ||||| |||||||||||||| Sbjct 766265 CCTCCTCTGAGACGAAGGACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGAC 766324 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || || | ||||||||||| || || | | ||||| ||| | || Sbjct 766325 AAGGTGCGGCCATCCTCGAGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 766384 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || | || ||||| || | |||||| | || || Sbjct 766385 ATTCCTTCCTTGTCTTGGATCTT-GGCTTTAACATTCTCGATGGTGTCAGAAGCCTCGAC 766443 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 766444 TTCAAGTGTGATAGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 766491 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| || ||||| ||||||||||||||||| ||||| | || |||||||| Sbjct 764584 ATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCCAATTG 764643 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 |||||||| || || | | ||||| ||| | || | ||||| ||||| || || Sbjct 764644 CTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 764703 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | | || | || | ||||||| | ||| || || | ||||| || || || | Sbjct 764704 -AGCCTTGACGTTTTCAATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGG 764762 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || |||||||||||| Sbjct 764763 TCAAAGTCTTGACGAAGATCTGCATA 764788 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| ||| || || |||||||| || || || || | | | || ||| Sbjct 764351 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCC 764410 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| ||||| || || || | ||| ||||||||| | || | || || ||||| | Sbjct 764411 AATTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 764470 Query 33661 ATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || |||| | | ||| ||||||| | || || || | ||||| || || Sbjct 764471 ATCTTGGCCTTCA-CGTTTTCAATGGTGTCGGAAGCCTCAACTTCGAGGGTGATGGTCTT 764529 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || || || || |||||||||||| Sbjct 764530 TCCAGTCAAGGTCTTGACGAAGATCTGCATA 764560 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||||||| || | ||||| || || || ||| || || ||||| || ||||| Sbjct 764788 ACCTCCTCTCAAGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGA 764847 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | || |||||||| || ||||||||||| |||||| | || Sbjct 764848 CAAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGG 764907 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || | | || | || | ||||||| | ||| | Sbjct 764908 GATTCCCTCCTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGA 764966 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 764967 CTTCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATA 765016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328690759905600