Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq19 138 3e-27 seq24 105 2e-17 seq157 96.9 8e-15 seq156 96.9 8e-15 >seq19 Length=917137 Score = 138 bits (152), Expect = 3e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||||||| | || |||||||| ||||| |||| ||||| ||| ||||| |||| Sbjct 766705 CAAAACGTTGACTGGAAAAACCATCACCCTGGAGGTGGAGGCTTCCGACACCATCGAGAA 766646 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || || |||||| || ||| ||| | || ||||| Sbjct 766645 TGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCACCAGACCAACAACGTCTCATCTT 766586 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||| | || |||||| ||||| || | || |||||| ||||||| ||||| Sbjct 766585 CGCCGGAAAGCAGCTCGAGGATGGACGGACTCTGTCTGACTACAACATCCAGAAGGAGTC 766526 Query 206364 TACTCTTCACCTTGTT 206379 ||||||||| || ||| Sbjct 766525 TACTCTTCATCTCGTT 766510 Score = 134 bits (148), Expect = 3e-26 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| ||||| || ||||| | ||||| ||| ||| ||| Sbjct 766260 CAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAAGCTTCCGAC 766201 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| ||||| || ||||| || ||||||||| || || ||||| || || || Sbjct 766200 ACAATCGAAAATGTCAAAGCCAA-GATTCAAGACAAGGAGGGAATCCCACCAGATCAGCA 766142 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||||| ||||||||||||||||||||||| |||||| | || ||| | || |||||| | Sbjct 766141 GAGACTCATCTTCGCCGGAAAGCAGTTGGAGGATGGACGCACATTGTCTGACTACAACAT 766082 Query 206352 CCAGAAAGAGTCTACTCTTCA 206372 || || ||||| ||||| || Sbjct 766081 TCAAAAGGAGTCGACTCTCCA 766061 Score = 132 bits (146), Expect = 1e-25 Identities = 152/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| ||||| || ||||| | ||||| || ||||||| Sbjct 766488 CAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAGGCTTCTGAC 766429 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||| ||||| || |||||||| || ||| || Sbjct 766428 ACCATCGAGAATGTTAAAGCCAA-GATCCAAGACAAGGAAGGAATCCCACCAGACCAGCA 766370 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||||| |||||||||||||| ||| | || ||||| | || ||| ||||||||||| | Sbjct 766369 AAGACTCATCTTCGCCGGAAAACAGCTCGAGGATGGCCGCACCTTGTCCGATTACAACAT 766310 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 || || ||||| ||||||||| Sbjct 766309 TCAAAAGGAGTCGACTCTTCAC 766288 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || ||||| |||||||| ||| || ||| Sbjct 764784 CAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCCGAC 764725 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| ||||| || |||||||| || ||| ||| Sbjct 764724 ACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAA 764665 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||||||||||||||| ||||| ||||| | ||| | ||||||||||| || Sbjct 764664 AGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGCCGCACTCTCTCCGATTACAACATC 764605 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || || || || ||||| || || Sbjct 764604 CAAAAGGAATCCACCCTTCATCTCGT 764579 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || ||||| |||||||| ||| || ||||| |||| Sbjct 765000 AAGACCCTCACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCCGACACCATCGAGAAC 764941 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATC 206301 || ||| ||||| ||||| || || ||||| || || |||| || || ||| Sbjct 764940 GTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGA---TCAACAGCGTTTGATC 764884 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 ||||||||||||||| | || ||||| | || ||| |||| || ||| ||||||| ||| Sbjct 764883 TTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCTTGTCCGACTATAACATCCAGAAGGAG 764824 Query 206362 TCTACTCTTCACCTTGTT 206379 ||||| |||||| | ||| Sbjct 764823 TCTACCCTTCACTTGGTT 764806 Score = 109 bits (120), Expect = 1e-18 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| || |||||||||||||| ||||||| || ||||||| || ||||| |||||| || Sbjct 766510 AACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTCCGTCCATCCTC 766569 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||||||||||| || |||||||| Sbjct 766570 GAGCTGCTTTCCGGCGAAGATGAGACGTTGTTG 766602 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || ||||| | ||||| || ||| ||| Sbjct 764556 CAGATCTTCGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTTGAGGCTTCCGAC 764497 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||||||||| || || ||||| || || ||| Sbjct 764496 ACCATTGAAAACGTGAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAGCAA 764437 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| |||||||| ||||| |||||||| ||| | | || |||||| || Sbjct 764436 CGTCTCATCTTCGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCGGACTACAACATC 764377 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||||| ||| Sbjct 764376 CAGAAGGAGTCGACTCTCCAC 764356 Score = 104 bits (114), Expect = 6e-17 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || ||||| |||||||| ||| || ||||| |||| Sbjct 764035 AAGACCCTCACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCCGACACCATCGAGAAC 763976 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATC 206301 || ||| ||||| ||||| || || ||||| || || |||| || || ||| Sbjct 763975 GTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGA---TCAACAGCGTTTGATC 763919 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 ||||||||||||||| | || ||||| | || ||| |||| || ||| ||||||| ||| Sbjct 763918 TTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCTTGTCCGACTATAACATCCAGAAGGAG 763859 Query 206362 TCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || || || ||| | | ||||| Sbjct 763858 TCGACCCTCCATCTCGTTCTCCGTCTTCG 763830 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| | |||||| |||||||| ||||||| |||||||| | ||| || | ||||| || Sbjct 764806 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCGGCCATCCTC 764865 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||||||||||| | || |||||| Sbjct 764866 GAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGA 764899 >seq24 Length=791117 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| || |||||| | ||||| | | ||||| Sbjct 464033 CAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCTGAT 463974 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || |||||||| || ||| ||| Sbjct 463973 ACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAGCAA 463914 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||||||||||||||| ||||| ||||| | || | |||| || ||| | Sbjct 463913 AGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAACATT 463854 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || || |||||||||||| Sbjct 463853 CAAAAGGAATCTACTCTTCAC 463833 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| || |||||| | ||||| | | ||||| Sbjct 463404 CAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCTGAT 463345 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || |||||||| || ||| ||| Sbjct 463344 ACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAGCAA 463285 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||||||||||||||| ||||| ||||| | || | |||| || ||| | Sbjct 463284 AGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAACATT 463225 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || || ||||| |||||| Sbjct 463224 CAAAAGGAATCTACCCTTCAC 463204 >seq157 Length=243809 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||||||| || || |||||||| ||||||||||||||| Sbjct 218071 AAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAAAGACTGATCTTCGCCGGAAAG 218130 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | || |||||| | ||| | |||| |||||| |||| || ||||| ||||| ||| Sbjct 218131 CAACTCGAGGATGGACGTACTCTCTCCGACTACAACATCCAAAAGGAGTCGACTCTCCAC 218190 Query 206374 CTTGTT 206379 | ||| Sbjct 218191 TTGGTT 218196 >seq156 Length=445966 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||||||| || || |||||||| ||||||||||||||| Sbjct 424476 AAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAAAGACTGATCTTCGCCGGAAAG 424417 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | || |||||| | ||| | |||| |||||| |||| || ||||| ||||| ||| Sbjct 424416 CAACTCGAGGATGGACGTACTCTCTCCGACTACAACATCCAAAAGGAGTCGACTCTCCAC 424357 Query 206374 CTTGTT 206379 | ||| Sbjct 424356 TTGGTT 424351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181770755428905