Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq157 89.7 5e-13 seq156 89.7 5e-13 seq19 84.2 2e-11 >seq157 Length=243809 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | ||||| ||||| |||||||||||| | ||||| ||| || Sbjct 218196 AACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 218137 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| || || |||| |||| || | || |||||||| || || ||||| || || Sbjct 218136 GAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 218077 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | || | ||||||| | ||| ||||||| || | || || Sbjct 218076 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTT 218017 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||| |||||||| || | ||| || ||||||||| Sbjct 218016 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACT 217983 >seq156 Length=445966 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | ||||| ||||| |||||||||||| | ||||| ||| || Sbjct 424351 AACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 424410 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| || || |||| |||| || | || |||||||| || || ||||| || || Sbjct 424411 GAGTTGCTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 424470 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | || | ||||||| | ||| ||||||| || | || || Sbjct 424471 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTT 424530 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||| |||||||| || | ||| || ||||||||| Sbjct 424531 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACT 424564 >seq19 Length=917137 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||| | |||||| || | | | ||||| || || ||||| |||||| || ||| || Sbjct 764797 CAAGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCG 764856 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||| |||||||| || |||| |||| | ||||||||||||||| || || || || Sbjct 764857 GCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCCTC 764916 Query 132025 TTTATC 132030 || || Sbjct 764917 CTTGTC 764922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476591509999800