Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq19 98.7 9e-16 seq24 89.7 5e-13 seq157 87.8 2e-12 seq156 87.8 2e-12 >seq19 Length=917137 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || || |||||||| | ||||| | |||||||||||| | Sbjct 764787 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 764728 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || || || || || || || || || ||| Sbjct 764727 GACACCATTGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 764668 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||||||| | || ||| || ||| | || |||| | | | || ||||||||| Sbjct 764667 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGCCGCACTCTCTCCGATTACAAC 764608 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 || ||||| ||||||||| ||||| Sbjct 764607 ATCCAAAAGGAATCCACCCTTCAT 764584 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | |||||||| | ||||| | |||||||| || Sbjct 766491 ATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAGGCTTCT 766432 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || ||| || || || || || || || || || || ||| Sbjct 766431 GACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 766372 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 ||||||||||| | || ||| ||||| ||||| |||| | | |||| |||||||| Sbjct 766371 CAAAGACTCATCTTCGCCGGAAAACAGCTCGAGGATGGCCGCACCTTGTC--CGATTACA 766314 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 | |||||||| || || || |||| || || | | | |||||||||| Sbjct 766313 ACATTCAAAAGGAGTCGACTCTTCACTTGGTCCTTCGTCTCAGAGGAGGAA 766263 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | || ||||| | ||||| | |||||||||||| | Sbjct 765754 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCTTGGAAGTCGAAGCCTCC 765695 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || ||||| || || ||||| || || || |||||| Sbjct 765694 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAGGGAATTCCACCAGATCAG 765635 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | || || || ||| | || |||| |||| | | ||||||||| Sbjct 765634 CAACGTCTCATCTTCGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCGGATTACAAT 765575 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || ||||| || ||||| ||||||| ||| Sbjct 765574 ATCCAAAAGGAGTCCACTCTTCATTTGGTG 765545 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | |||||||| | ||||| | ||||||||||| | Sbjct 766263 ATGCAGATCTTTGTCAAGACTCTCACCGGAAAGACTATCACACTTGAAGTCGAAGCTTCC 766204 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| || ||| || || ||||| || || || |||||| Sbjct 766203 GACACAATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 766144 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 || |||||||| | || ||| || || | || |||| | | |||| || |||| Sbjct 766143 CAGAGACTCATCTTCGCCGGAAAGCAGTTGGAGGATGGACGCACATTGTC--TGACTACA 766086 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 | |||||||| || || || | ||||| ||| | | | |||||||||| Sbjct 766085 ACATTCAAAAGGAGTCGACTCTCCATTTGGTGCTCCGTCTCAGAGGAGGAA 766035 >seq24 Length=791117 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | || ||||| | ||||| ||||||||| |||| Sbjct 463407 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCT 463348 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || || || || ||||| || || || || || || ||| Sbjct 463347 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 463288 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||||||| | || ||| || ||| | || |||| | | | || ||| || || Sbjct 463287 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 463228 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| ||||| ||| |||| || || Sbjct 463227 ATTCAAAAGGAATCTACCCTTCACTTGGT 463199 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | || ||||| | ||||| ||||||||| |||| Sbjct 464036 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACTCTCGAAGTCGGAGCCTCT 463977 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || || || || ||||| || || || || || || ||| Sbjct 463976 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAG 463917 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||||||||| | || ||| || ||| | || |||| | | | || ||| || || Sbjct 463916 CAAAGACTCATCTTCGCCGGAAAGCAATTGGAGGATGGTCGCACCCTCTCCGACTATAAC 463857 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| ||||| || |||| || || Sbjct 463856 ATTCAAAAGGAATCTACTCTTCACTTGGT 463828 >seq157 Length=243809 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || || | || || || | || || |||||||||| ||| Sbjct 217986 CATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTC 218045 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| |||||| | || || || || || || || || || || || ||||| Sbjct 218046 CGATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCA 218105 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||| || | || ||| || |||||||| |||| | | | || ||| ||||| Sbjct 218106 GCAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAA 218165 Query 25354 TATTCAAAAAGAATCCAC 25371 || ||||| || || || Sbjct 218166 CATCCAAAAGGAGTCGAC 218183 >seq156 Length=445966 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || || | || || || | || || |||||||||| ||| Sbjct 424561 CATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTC 424502 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| |||||| | || || || || || || || || || || || ||||| Sbjct 424501 CGATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCA 424442 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||| || | || ||| || |||||||| |||| | | | || ||| ||||| Sbjct 424441 GCAAAGACTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAA 424382 Query 25354 TATTCAAAAAGAATCCAC 25371 || ||||| || || || Sbjct 424381 CATCCAAAAGGAGTCGAC 424364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445076012037600