Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq441 105 8e-18 seq11 98.7 1e-15 seq354 89.7 6e-13 >seq441 Length=99109 Score = 105 bits (116), Expect = 8e-18 Identities = 286/437 (65%), Gaps = 8/437 (2%) Strand=Plus/Plus Query 147070 CTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGG 147129 ||||| || || || ||||||||||| || | |||| |||||||| |||| | || Sbjct 96400 CTCTGATAAAGTTGACACGAGAGCTCTCCATTCTCCACATAAAACTGACACATCGTATGA 96459 Query 147130 CACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGC 147189 ||||| |||| | |||| || |||| || ||||| || || | | | ||| Sbjct 96460 CACGGTGGCAACACCATCTGACCCAAATCCGACGGATTCCACGCGGACATGATGATTCGC 96519 Query 147190 CTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTC----AGCTGGTCCACGCC 147245 | ||| ||||| | | ||| || | | ||| ||| || ||||| || || || Sbjct 96520 CGGCTGTCGGGCTCCTCCTTGATTTGTCGGAT----CACTTCGGCGAGCTGATCGACACC 96575 Query 147246 CTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAA 147305 ||| || ||||| ||| || |||||||| | || || || || |||||||| || Sbjct 96576 CTGACCGGTGTAGTCTGTGTGACAATCCACGTATTTCGCTCCGAAATGTCTCCACTGAAA 96635 Query 147306 GCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAA 147365 ||||| |||||||| ||||| || || | || ||| || | ||| || Sbjct 96636 TCCGTAGACTGGCCCGAGGTCACCCTCCTCGCGAGCCGTGAATCCGAGATTGTCGAGGAA 96695 Query 147366 CTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTC 147425 | | |||| ||||| || ||| || || | | | ||| ||| Sbjct 96696 GGAGCGATCGCCGTTCTTCTCCCAAATTTTCACATTTTTCGCCGCCAACAACTTTCCGTC 96755 Query 147426 CGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTT 147485 |||||||| |||||||||||||||||| || | || ||| ||||| |||| | ||| Sbjct 96756 GGTGGAGCCGGAGATGAACCAGAGCAGCTCTTCGAGCACTCCCTTCCAATAGACACGCTT 96815 Query 147486 GGTGGTCAGCAGGGGGA 147502 ||||| ||||| |||| Sbjct 96816 TGTGGTGAGCAGTGGGA 96832 >seq11 Length=2072269 Score = 98.7 bits (108), Expect = 1e-15 Identities = 189/278 (68%), Gaps = 8/278 (3%) Strand=Plus/Minus Query 147056 CCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACT 147115 |||| ||||| ||||| || || || ||||||||||| || | |||| ||||||| Sbjct 204008 CCATATCCCCGCTTCTCTGATAAAGTTGACACGAGAGCTCTCCATTCTCCACATAAAACT 203949 Query 147116 GGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCG 147175 | |||| |||| ||||| |||| | |||| || |||| || ||||| || | Sbjct 203948 GACACATCGTGTGACACGGTGGCAACACCATCTGACCCAAATCCGACGGATTCCACGCGG 203889 Query 147176 AGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTC---- 147231 | | | | |||| ||| ||||| | | ||| || | | ||| ||| || Sbjct 203888 ACATGATGATTCGCCGGCTGTCGGGCTCCTCCTTGATTTGTCGGAT----CACTTCGGCG 203833 Query 147232 AGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAG 147291 ||||| || || ||||| || ||||| || || |||||||| | || || || Sbjct 203832 AGCTGATCGACACCCTGACCGGTGTAGTCAGTGTGACAATCCACGTATTTCGCGCCGAAA 203773 Query 147292 TGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCC 147329 || |||||||| || ||||| |||||||| ||||| || Sbjct 203772 TGTCTCCACTGAAATCCGTAGACTGGCCCGAGGTCACC 203735 >seq354 Length=147946 Score = 89.7 bits (98), Expect = 6e-13 Identities = 288/446 (65%), Gaps = 26/446 (6%) Strand=Plus/Plus Query 147070 CTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGG 147129 ||||| | || || ||||||||||| || | |||| |||||||| |||| |||| Sbjct 145650 CTCTGATGAAGTTGACACGAGAGCTCTCCATTCTCCACATAAAACTGACACATCGTGTGA 145709 Query 147130 CACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGC 147189 ||||| |||| | |||| || ||| || || || || || | | | ||| Sbjct 145710 CACGGTGGCAACACCATCCGACCCAAATCCAACGGATTTCACGCGGACATGATTATTCGC 145769 Query 147190 CTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTC----AGCTGGTCCACGCC 147245 | ||| ||||| | | ||| || | | ||| ||| || ||||| || || || Sbjct 145770 CGGCTGTCGGGCTCCTCCTTGATTTGTCGGAT----CACTTCGGCGAGCTGATCGACACC 145825 Query 147246 CTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAA 147305 ||| || ||||| ||| || |||||||| | || || || || |||||||| || Sbjct 145826 CTGACCGGTGTAGTCTGTGTGACAATCCACGTATTTCGCGCCGAAATGTCTCCACTGAAA 145885 Query 147306 GCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAA 147365 ||||| ||||| |||||||| || || | || ||| || |||| Sbjct 145886 TCCGTAGACTGGTCCCAGGTCACCCTCCTCGCGAGCCGTGAATCC---------GAGATT 145936 Query 147366 CTCGGGG--GACCCG-TGGGCG------TCCCAGATGCCCACTCCCTTGGCGGAGAGCTC 147416 |||||| || || | | || ||||| || ||| || || | | | Sbjct 145937 GTCGGGGAAGAAGCGATCGCCGTTCTTCTCCCAAATTTTCACATTTTTCGCCGCCAACAA 145996 Query 147417 CTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAA 147476 ||| ||| |||||||| |||||||||||||||||| || | | ||| | ||| | Sbjct 145997 CTTTCCGTCGGTGGAGCCGGAGATGAACCAGAGCAGCTCTTCGAGCGCTCCCTTTCAATA 146056 Query 147477 GACCCTCTTGGTGGTCAGCAGGGGGA 147502 ||| | ||| ||||| ||||| |||| Sbjct 146057 GACACGCTTTGTGGTGAGCAGTGGGA 146082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583463894652000