Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq1827 102 1e-16 >seq1827 Length=14047 Score = 102 bits (112), Expect = 1e-16 Identities = 177/252 (70%), Gaps = 24/252 (10%) Strand=Plus/Minus Query 154257 TGACTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTTGGTTCGA 154316 ||| ||| |||||||||||| ||||||| ||| ||| ||| ||| |||| ||||||| Sbjct 7028 TGAGTCATTAGCTCAGTTGG-TAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTCGA 6970 Query 154317 GTCCAACCTGAGTCGCCAGT--------CGGTA-TGGCGGAATTGGTAGACGCGCCAGGT 154367 | || | ||| || ||| | |||| |||||||||||| |||||||| ||| Sbjct 6969 GCCCTTCATGACTCACCATTATATTTTGCGGTCGTGGCGGAATTGGCAGACGCGCACGGT 6910 Query 154368 TTAGGTTCTGGTGTCTTA---TGACGTGGAGGTTCAAGTCCTCT-TACCGACAC------ 154417 | |||| | ||| || ||||||||||| |||||||| |||| ||| Sbjct 6909 TCAGGTCCGTGTGGGCTAACCCCCCGTGGAGGTTCGAGTCCTCTCGACCG-CACCATATG 6851 Query 154418 --TCGCTCGAATAGCTCAGAGGTAGAGCACCTCCTTTACACGGAGATTGTCGGGGGTTCG 154475 | || | | |||||| ||||||||| | |||| || || || |||| ||||||| Sbjct 6850 TTTTGCGGAAGTGGCTCAGCGGTAGAGCATCGCCTTGCCAAGGCGAGGGTCGCGGGTTCG 6791 Query 154476 A-TCCCCTCTTC 154486 | |||| ||||| Sbjct 6790 ATTCCCGTCTTC 6779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605984564228400