Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq1827 93.3 5e-14 >seq1827 Length=14047 Score = 93.3 bits (102), Expect = 5e-14 Identities = 175/252 (69%), Gaps = 23/252 (9%) Strand=Plus/Minus Query 153172 TGGGTCAGTAGCTCAGATGGATAGAGCAATTCACTTCTAATGAATTGGTCGGGGGTTCGA 153231 || |||| |||||||| ||| ||||||| | |||| |||| | |||| ||||||| Sbjct 7028 TGAGTCATTAGCTCAGTTGG-TAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTCGA 6970 Query 153232 GTCCCTCCTGACCCGCCAGT--------CGGTA-TGGCGGAATTGGTAGACGCGCCAGGT 153282 | || || |||| | ||| | |||| |||||||||||| |||||||| ||| Sbjct 6969 GCCCTTCATGACTCACCATTATATTTTGCGGTCGTGGCGGAATTGGCAGACGCGCACGGT 6910 Query 153283 TTAGGTTCTGGTGTCTTTA--TGACGTGGAGGTTCAAGTCCTCT-TACCGACAC------ 153333 | |||| | ||| | | ||||||||||| |||||||| |||| ||| Sbjct 6909 TCAGGTCCGTGTGGGCTAACCCCCCGTGGAGGTTCGAGTCCTCTCGACCG-CACCATATG 6851 Query 153334 --TCGCTCGAATAGCTCAGAGGTAGAGCAGCACCTTTACACGGTGAATGTCGGGGGTTCG 153391 | || | | |||||| ||||||||| | |||| || || || |||| ||||||| Sbjct 6850 TTTTGCGGAAGTGGCTCAGCGGTAGAGCATCGCCTTGCCAAGGCGAGGGTCGCGGGTTCG 6791 Query 153392 A-TCCCCTCTTC 153402 | |||| ||||| Sbjct 6790 ATTCCCGTCTTC 6779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610304385758400