Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq17 179 5e-40 seq202 125 1e-23 >seq17 Length=1338299 Score = 179 bits (198), Expect = 5e-40 Identities = 467/710 (66%), Gaps = 4/710 (1%) Strand=Plus/Plus Query 69504 TGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGG 69563 |||||| || || || || |||||||| |||||| | ||| || || || ||| Sbjct 168002 TGTATAGAGTTTCTCAAACTCCTCTCCCCAGCAATCATCGAGTCCTGGGCACTCGCATGG 168061 Query 69564 ACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCA 69623 |||||||| ||||| | | ||| | || || |||||||| || ||||| |||| ||| Sbjct 168062 GCACATCAACGACCAATCTTGATCCTTCTCGACACGTTTCATGAAGAGATCTGGAACCCA 168121 Query 69624 AAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATC 69683 || || | || | || | | | | |||||| || || ||||| ||| | Sbjct 168122 GAGGGCAAGGAACAAGTCACGAGCGCGCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGC 168181 Query 69684 GAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCG 69743 || ||||| | | || | |||||||| || ||||| || || | | || || || Sbjct 168182 GACGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGATAGATAGCGAATGCACCTGGACG 168241 Query 69744 TTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAAT 69803 || |||||||| ||||| | || | |||||||| || || || | ||||| ||||| Sbjct 168242 CTTGTTTCCTCCTTGATCGACATAACGAGCAGTGTTGTTGTAAACACGGAGCATTGGAAT 168301 Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACT--TCCTCTTGCGCGAATATTA 69861 || ||||| || | ||||| ||||| | || ||| ||| | || ||||| || Sbjct 168302 AAGTCCATTGGAAGTTCCATTGGTTCCGGCGATG--ACTGATCCGGTGGCACGAATCTTG 168359 Query 69862 CTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTG 69921 | | ||||| |||||||| || | || ||||| || ||||| |||||| ||| Sbjct 168360 TGGACATTGAGACCAATTCCTCCAGCACTCTTCGAGATGAGTGCACACTGTTTCAGAGTG 168419 Query 69922 TCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGA 69981 || || || || || ||| || |||| | || | || || ||||| || Sbjct 168420 TCGTAGATTCCGAGAATCGAATCTTCGCTCATCGTGAGCAAGAAGCACGATGACATCTGT 168479 Query 69982 TGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAA 70041 || | ||||| | || || | || || ||||| || || | | ||| || Sbjct 168480 GGACGACACGTTCCAGAGTTGAAGAGAGTTGGTGATGCATGTGTCATGTACCGTTCCGAC 168539 Query 70042 AGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACA 70101 | || |||||||||||| || || | | || || |||||||| || |||||| Sbjct 168540 ATCAAATTGTATGTTTCGATGGCGGCAGCAATGTCATTTCCGTGAATTCCGATAGCGACA 168599 Query 70102 CGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGAT 70161 ||||||||||| |||||||| || || || || || || || || | ||||| || Sbjct 168600 CGCATCAACATTTGCTGAGGACGCTCAACAACTTCTTTGTTAATCTTGAGAAGGTAGGAC 168659 Query 70162 TTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 70211 || || || || || || || || |||| ||| |||| | ||||| Sbjct 168660 CGCTCGAGTGTCTTGAATCCGAAGTAAGTGTAGGAATAGTCACGATCGTA 168709 Score = 172 bits (190), Expect = 8e-38 Identities = 300/436 (69%), Gaps = 3/436 (1%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || || || ||||| | |||||||| || || || || || ||||||||||||| Sbjct 166603 GCTGGCTTAGTACGCAAGTAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAG 166662 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 ||||| || | || || ||||| | ||| || ||||| || | |||||| | Sbjct 166663 TGCATTGAGGTGATACCGGCGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGAT 166722 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||||||||| ||||| | ||| || ||||| | ||||| ||| || | || ||| Sbjct 166723 TGATCGATGAATGCTCCACGATCAGCAGCCATCTCGATAATCTCCTTCTGTGAGATCTCC 166782 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCG---TATTTTGAATGGAT 68631 || | || | | | ||||| |||||||| | | | | |||||||||||| Sbjct 166783 CATACTGTGCGGTAGAGTTCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGAT 166842 Query 68632 CCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAA 68691 ||| | || || | | | ||||| |||||||| ||||||| |||||| ||| Sbjct 166843 CCATTGTTGGCAATGAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCAAA 166902 Query 68692 ACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAA 68751 | | || | || ||||| || || || || || || || | ||| | || | ||| Sbjct 166903 TCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAG 166962 Query 68752 ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCA 68811 ||||| || ||||| || | |||||| || ||||| ||||||||||| || || ||| Sbjct 166963 ATATTGGATGTGTATGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCA 167022 Query 68812 GTTGGCATAGGTGCCA 68827 |||||||| ||||||| Sbjct 167023 GTTGGCATCGGTGCCA 167038 >seq202 Length=205773 Score = 125 bits (138), Expect = 1e-23 Identities = 293/438 (67%), Gaps = 7/438 (2%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 ||||| || | ||| | ||||||||| || || || | || ||||||||| || Sbjct 120702 GCGGGCTTAGAACGCAAATAGTACATTCCAGTCTTAACTCCCTTTTTCCATCCGTGAAAG 120643 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 | ||| || | ||| || || || | || || ||||| || | ||||||| | Sbjct 120642 TACATTGAGGTGACACTGGCGTAGCTGGGTTTTGCCATGTGAATGTTTAGCGATTGAGAT 120583 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| ||||| ||||| | ||| || ||||| | || | ||| || | || ||| Sbjct 120582 TGATCAATGAATGCTCCACGATCAGCGGCCATCTCGATGGTTTCCTTCTGTGATATCTCC 120523 Query 68575 CAAATAGTCT--TAAAAATCTGTTTGATATCATCTGGAAGGCT--CGTA-TTTTGAATGG 68629 || | || || ||||| ||||| || || |||| | || | |||||||| | Sbjct 120522 CATACGGTGCGGTAGAAATCC--TTGATGTCGTCAGGAATTCCTGCGAAGTTTTGAATAG 120465 Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689 |||| | | || | | | ||||| ||||||| ||||||| |||||| | | Sbjct 120464 ATCCGTTGTTAGCGATGAGTGTGTTCTTCATCTCATTGGACCACAATCCTCTCTCAATCA 120405 Query 68690 AAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGT 68749 || | | || | || ||||| || || || || || || || | ||| | |||| || Sbjct 120404 AATCCTTGAGCATGTGTGGATTCACAATCTGGAAGTCGCCGGAGAGCACGCGCCGAGAGT 120345 Query 68750 AAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATG 68809 | ||||| || ||||| || | ||| || || || || ||||||||||| || || | Sbjct 120344 AGATATTCGATGTGTATGGCTCTATAGACTCGTTGTTACCAAGAATTTGAGCGGTGGAAG 120285 Query 68810 CAGTTGGCATAGGTGCCA 68827 |||||||||| || |||| Sbjct 120284 CAGTTGGCATCGGCGCCA 120267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686880422080200