Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq301 109 4e-19 seq659 100 2e-16 seq1143 82.4 6e-11 seq221 82.4 6e-11 seq196 82.4 6e-11 seq154 82.4 6e-11 >seq301 Length=94310 Score = 109 bits (120), Expect = 4e-19 Identities = 265/395 (67%), Gaps = 10/395 (3%) Strand=Plus/Minus Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT-GTA 19608 || |||||||| | |||||| | ||||| || |||||||| ||||| || ||| | | Sbjct 26533 CATATTATAATTTTCGATGAAATCGACGCGATTTGTAAGCAGAGAGGATCGATGGCCGGA 26474 Query 19609 A----ATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAA 19664 | || ||| |||||||| || ||||| || ||| |||| ||| | || ||||| | Sbjct 26473 AGCTCATC-AGTTCATGACACCGTCGTCAACCAGCTCTTGTCGAAAATGGATGGTGTGGA 26415 Query 19665 CCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGC 19724 || ||||| || || | || || || ||||| ||| | | ||| | || ||| || Sbjct 26414 GCAGCTGAACAACATCCTCGTGATAGGAATGACAAATCGTCGGGACATGATCGACGAAGC 26355 Query 19725 CTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGG 19784 | | || || ||||| || || || |||| ||| | |||||||||||||| ||| Sbjct 26354 ACTTCTCCGTCCTGGTCGATTAGAGGTACAGATGGAAGTGTCCTTACCCGATGAATTTGG 26295 Query 19785 ACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGA 19844 ||| | |||| | | || ||||| | |||||| || ||||| | || Sbjct 26294 ACGACTTCAAATCCTCAGAATCCATACCGCCCGAATGCGAGAATATAACAAAATGGATCC 26235 Query 19845 CGATGTAGATCTAGAAGAAAT-TGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTG 19903 | | || ||||| || || | | || | ||||| |||| || |||||| | | Sbjct 26234 CAAGGTCGATCTGGAGGACCTCTCCAAAAG-AACCAAGAACTTCTCGGGAGCAGAATTGG 26176 Query 19904 AGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 | ||| | ||||| || ||||| || | ||| ||| Sbjct 26175 AAGGACTGGTGAGAGCAGCCCAGTCCAGTGCGATG 26141 Score = 105 bits (116), Expect = 5e-18 Identities = 262/394 (66%), Gaps = 8/394 (2%) Strand=Plus/Minus Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT-GTA 19608 |||||||| || | |||||| | || || || |||||||| ||||| || ||| | | Sbjct 34236 CACATTATCATTTTCGATGAAATCGATGCGATTTGTAAGCAGAGAGGATCAATGGCCGGA 34177 Query 19609 A----ATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAA 19664 | || ||| |||||||| || ||||| || ||| |||| ||| | || ||||| | Sbjct 34176 AGCTCATC-AGTTCATGACACCGTCGTCAACCAGCTCTTGTCGAAAATGGATGGTGTGGA 34118 Query 19665 CCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGC 19724 || || || || || | |||||||| ||||| ||| | | ||| | || ||| || Sbjct 34117 GCAGCTCAACAACATCCTCGTTATTGGAATGACGAATCGTCGGGACATGATCGACGAAGC 34058 Query 19725 CTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGG 19784 | | || || ||||| || || || |||| ||| | |||||||||||||| ||| Sbjct 34057 ACTTCTCCGTCCTGGTCGATTAGAGTTACAGATGGAAGTGTCCTTACCCGATGAATTTGG 33998 Query 19785 ACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGA 19844 ||| | |||| | | || ||||| | ||||| || ||||| | || Sbjct 33997 ACGACTTCAAATCCTCAGAATCCATACCGCCCGAATGCGCGAATATAACAAAATGGATCC 33938 Query 19845 CGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGA 19904 | | || || || || || || || | || || |||| || |||||| | || Sbjct 33937 CAAGGTCGACCTGGAGGACCTTTCAAAGAGAACAAATAACTTCTCGGGAGCAGAATTAGA 33878 Query 19905 GGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 ||| | ||||| || ||||| || | ||| ||| Sbjct 33877 AGGACTGGTGAGAGCAGCCCAGTCCAGTGCGATG 33844 >seq659 Length=46953 Score = 100 bits (110), Expect = 2e-16 Identities = 252/379 (66%), Gaps = 8/379 (2%) Strand=Plus/Minus Query 19567 GATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT-GTAA----ATGGAGTACA 19619 |||||| | || || || |||||||| ||||| || ||| | || || ||| || Sbjct 37919 GATGAAATCGATGCGATTTGTAAGCAGAGAGGATCAATGGCCGGAAGCTCATC-AGTTCA 37861 Query 19620 TGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATAT 19679 |||||| || ||||| || ||| |||| ||| | || ||||| | || || || || || Sbjct 37860 TGACACCGTCGTCAACCAGCTCTTGTCGAAAATGGATGGTGTCGAGCAGCTCAACAACAT 37801 Query 19680 TTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGG 19739 | |||||||| ||||| ||| | | ||| | || ||| || | | || || || Sbjct 37800 CCTCGTTATTGGAATGACGAATCGTCGGGACATGATCGACGAAGCACTTCTCCGTCCTGG 37741 Query 19740 TCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTT 19799 ||| || || || |||| ||| | |||||||||||||| |||||| | |||| | Sbjct 37740 TCGATTAGAGGTACAGATGGAAGTGTCCTTACCCGATGAATTTGGACGACTTCAAATCCT 37681 Query 19800 AAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGA 19859 | || ||||| | ||||| || ||||| | || | | || || || || Sbjct 37680 CAGAATCCATACCGCCCGAATGCGCGAATATAACAAAATGGATCCCAAGGTCGACCTGGA 37621 Query 19860 AGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGC 19919 || || || | ||||| |||| || |||||| | || ||| | ||||| || Sbjct 37620 GGACCTTTCAAAGCGAACCAAGAACTTCTCGGGAGCAGAATTAGAAGGACTGGTGAGAGC 37561 Query 19920 CGCCCAATCAATTGCAATG 19938 ||||| || | ||| ||| Sbjct 37560 AGCCCAGTCCAGTGCGATG 37542 >seq1143 Length=10434 Score = 82.4 bits (90), Expect = 6e-11 Identities = 213/325 (66%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 19614 AGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAA 19673 ||| |||||||| || ||||| || ||| |||| ||| | || ||||| | || || || Sbjct 6981 AGTTCATGACACCGTCGTCAACCAGCTCTTGTCGAAAATGGATGGTGTCGAGCAGCTCAA 7040 Query 19674 TAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACG 19733 || || | || || || ||||| ||| | | ||| | || ||| || | | || Sbjct 7041 CAACATCCTCGTGATAGGAATGACGAATCGTCGGGACATGATCGACGAAGCACTCCTCCG 7100 Query 19734 ACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGA 19793 || | ||| || || || |||| ||| | |||||||||||||| |||||| | | Sbjct 7101 TCCTGCTCGATTAGAGTTACAGATGGAAGTGTCCTTACCCGATGAATTTGGACGACTTCA 7160 Query 19794 AATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGTAGA 19853 ||| | | || ||||| || ||||| || ||||| | || | | || || Sbjct 7161 AATCCTCAGAATCCATACCGCACGAATGCGCGAATATAACAAAATGGATCCCAAGGTCGA 7220 Query 19854 TCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGT 19913 || || || || || | || || |||| || |||||| | || ||| | || Sbjct 7221 CCTGGAGGACCTTTCAAAGAGAACAAATAACTTCTCGGGAGCAGAATTGGAAGGACTTGT 7280 Query 19914 GAGGGCCGCCCAATCAATTGCAATG 19938 ||| || ||||| || | ||| ||| Sbjct 7281 GAGAGCAGCCCAGTCCAGTGCGATG 7305 >seq221 Length=163086 Score = 82.4 bits (90), Expect = 6e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 ||||| ||||||||||||||||||||||| |||| || || ||||||||||||||||| Sbjct 162988 AACCCTTTTGATTTTATGGAAAATATTTCAATGGAGGGAAAGGCAAACTTTTTTGAAAAA 162929 Query 44555 CGCGT 44559 || || Sbjct 162928 CGAGT 162924 >seq196 Length=138734 Score = 82.4 bits (90), Expect = 6e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 ||||| ||||||||||||||||||||||| |||| || || ||||||||||||||||| Sbjct 135238 AACCCTTTTGATTTTATGGAAAATATTTCAATGGAGGGAAAGGCAAACTTTTTTGAAAAA 135297 Query 44555 CGCGT 44559 || || Sbjct 135298 CGAGT 135302 >seq154 Length=279404 Score = 82.4 bits (90), Expect = 6e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 ||||| ||||||||||||||||||||||| |||| || || ||||||||||||||||| Sbjct 670 AACCCTTTTGATTTTATGGAAAATATTTCAATGGAGGGAAAGGCAAACTTTTTTGAAAAA 611 Query 44555 CGCGT 44559 || || Sbjct 610 CGAGT 606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397439990596525