Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq19 111 1e-19 seq202 82.4 6e-11 >seq19 Length=917137 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | ||||| || | ||||| || || || || || |||||| | Sbjct 764789 CCTCCTCTCAAGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGAC 764848 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || |||||||| || |||||| | || | |||||||||||| || || Sbjct 764849 AAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGG 764908 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | | || | ||||| | |||||| ||| Sbjct 764909 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACT 764968 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || | || || | || || || || || ||||| ||||| |||||| || Sbjct 764969 TCCAAGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATACCT 765019 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || |||||||| ||||| ||| || | |||| | || ||| Sbjct 766283 ACCAAGTGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGACAAGGTGCGGCCATCCTCG 766342 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| |||||| | ||||| | || || || || || | || || || || | Sbjct 766343 AGCTGTTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 766402 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||| | | || | ||||| | || || ||||| || || |||| || Sbjct 766403 ATCTTGGCTTTAACATTCTCGATGGTGTCAGAAGCCTCGACTTCAAGTGTGATAGTCTTT 766462 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || |||||||| ||||| Sbjct 766463 CCGGTGAGAGTCTTGACAAAGATCTGCAT 766491 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || || |||||| || | |||| | || |||||||| || ||| Sbjct 763854 GTCGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCGGCCATCCTCGAGCTGCTTTCCG 763913 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | |||||||||||| || || | ||||| || || ||||||| || Sbjct 763914 GCGAAGATCAAACGCTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTG 763973 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | |||||| ||||| | || || | || || || || || Sbjct 763974 ACGTTCTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATGGTCTTTCCGGTGAGGGTC 764033 Query 27231 TTCACAAAGATTTGCATAGCT 27251 ||||| ||||| |||||| || Sbjct 764034 TTCACGAAGATCTGCATACCT 764054 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | || | ||| | ||||| || || || || |||||||| | Sbjct 766493 CCTCCGCGGAGACGAAGAACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 766552 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || |||||||| || |||||| | |||||||| ||||| || || || Sbjct 766553 AGAGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGA 766612 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| ||||||| || | | || | ||||| | || || || Sbjct 766613 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGAAGCCTCCACC 766672 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||| || |||| ||||| || ||||||||||| Sbjct 766673 TCCAGGGTGATGGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 766719 >seq202 Length=205773 Score = 82.4 bits (90), Expect = 6e-11 Identities = 172/251 (69%), Gaps = 13/251 (5%) Strand=Plus/Minus Query 130399 GCCACTGTTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATA 130458 |||||| || ||||| |||||||||| || ||| || ||||| | |||||||| || Sbjct 120738 GCCACT-TTGTCGACTGTGAATTGAACAGCGTTGACAGCGGGCTTAGAACGCAAATAGTA 120680 Query 130459 CATGCCTGTTTTGAGTCCAATTTTGTGTCCATAATTGTGGAT---GCTGCACATTGTTTG 130515 ||| || || || | ||| |||| ||| | | || || | || ||| || Sbjct 120679 CATTCCAGTCTTAACTCCCTTTTTCCATCCGTGAAAGTACATTGAGGTG-ACACTGGC-- 120623 Query 130516 GTAATTGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCT 130575 ||| |||||| |||| | ||||| |||||||| ||||||||||| || || || | Sbjct 120622 GTAGCTGGGTTTTGCCATGTGAATGTTTAGCGATTGAGATTGATCAATGAATGCTCCACG 120563 Query 130576 GTCTGCAGCCATGTCGAGCATGGTT---TTATTTTTCATCTCCCAAGCGGTCTTGTATAG 130632 || || ||||| ||| |||||| || | | |||||||| |||| ||| | Sbjct 120562 ATCAGCGGCCATCTCG---ATGGTTTCCTTCTGTGATATCTCCCATACGGTGCGGTAGAA 120506 Query 130633 ATCCCTAATGT 130643 |||| | |||| Sbjct 120505 ATCCTTGATGT 120495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424917283775160