Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq1150 459 1e-124 seq2093 286 1e-72 seq258 251 3e-62 seq810 172 2e-38 seq1552 165 3e-36 seq341 143 1e-29 seq523 140 1e-28 seq608 116 1e-21 seq109 116 1e-21 seq1160 111 6e-20 seq436 104 9e-18 seq550 93.3 2e-14 seq654 84.2 8e-12 >seq1150 Length=15291 Score = 459 bits (508), Expect = 1e-124 Identities = 338/381 (89%), Gaps = 11/381 (3%) Strand=Plus/Minus Query 22123 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 3962 AATTACACACCGCCCTGCCACTCATCGCAGTACTGATGTAATTCATTAAGCATTCTGCCG 3903 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 22242 |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 3902 ACATGGAAGCCATCACTAACGGCATGATGAACCTGAATCGCCTCCGGCATCAGCACCTTG 3843 Query 22243 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG 22302 ||||||||| ||||| |||||||||||||| |||||||||| || |||||||| |||| | Sbjct 3842 TCGCCTTGCATATAA-ATTTGCCCATGGTG-AAACGGGGGCCAACAAGTTGTCTATATGG 3785 Query 22303 GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA 22362 ||||||||| |||| || ||| ||| |||||||||| || || |||||||||||||| || Sbjct 3784 GCCACGTTT-AATC-AATCTGATGACACTCACCCAGTGA-TGTCTGAGACGAAAAACCTA 3728 Query 22363 TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC 22422 ||||||||||| |||||| ||||||||||||| | ||| |||||||| ||||||||| Sbjct 3727 TTCTCAATAAAGCCTTTATTGAAATAGGCCAGG-TGTCATCGTAACACCGCACATCTTGG 3669 Query 22423 GAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAAC 22482 |||| ||| ||| |||||||| |||||||||| |||||||||||||||||||||| Sbjct 3668 CGATATTTGT-TAGGAACTGCCG--AATCGTCGTGCTATTCACTCCAGAGCGATGAAATA 3612 Query 22483 GTTTCAGTTTGCTCATGGAAA 22503 |||| || ||||||||||||| Sbjct 3611 GTTT-AG-TTGCTCATGGAAA 3593 >seq2093 Length=5465 Score = 286 bits (316), Expect = 1e-72 Identities = 236/277 (85%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 22130 CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGA 22189 |||||||||||||||||||||||| |||||| || |||| || ||| ||||||||||||| Sbjct 5190 CCCCGCCCTGCCACTCATCGCAGT-CTGTTGCAAATCAT-AACCAT-CTGCCGACATGGA 5246 Query 22190 AGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT 22249 ||||||||||| |||||||||||| ||||||| ||| ||| ||| |||||||||||||| Sbjct 5247 AGCCATCACAA-CGGCATGATGAAACTGAATCCCCA-CGGGATCCACACCTTGTCGCCTT 5304 Query 22250 GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGT 22309 ||| ||| ||||| |||||||||||||||||||||| || ||||||||||| |||| | Sbjct 5305 GCGAATATAATTTGTCCATGGTGAAAACGGGGGCGAAAAATCTGTCCATATTGCCCAC-T 5363 Query 22310 TTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAA 22369 |||||| | ||||||||||||| |||||||||||||| | | |||| | ||||||| Sbjct 5364 ATAAATC-ATACTGGTGAAACTCCCCCAGGGATTGGCTTAAAACCAAAAAAAATTCTCAT 5422 Query 22370 TAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTA 22406 || ||||||||||||| ||||| || | || ||||| Sbjct 5423 AAACCCCTTTAGGGAAA-AGGCCGGGATATCCCCGTA 5458 >seq258 Length=145804 Score = 251 bits (278), Expect = 3e-62 Identities = 203/236 (86%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 22123 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 75527 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGATGGAATTCATTAAGCATTCTGCCG 75586 Query 22183 ACATGGAAGCCATCACAAACGGC-ATGATGAACCTGA-ATCGCCAGCGGCATCAGCACCT 22240 || || ||| |||||| ||||| ||||| |||||| ||||||||| |||||| |||| Sbjct 75587 ACGTGAGAGCTATCACAGACGGCTGTGATGTACCTGATATCGCCAGCAGCATCAACACCG 75646 Query 22241 TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACG-GGGGCGAAGAAGTTGTCCATA 22299 || |||||||| ||||||||| ||||||||||||||| ||||||| ||||||||||| Sbjct 75647 TGGCGCCTTGCCTATAATATTCACCCATGGTGAAAACGAGGGGCGATATAGTTGTCCATA 75706 Query 22300 TTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAA 22355 |||| | | |||||| |||| ||||||||||||||| || | ||||||||||| Sbjct 75707 TTGG-GTCTTGTAAATC-TAACT-GTGAAACTCACCCAGTGA-TAGCTGAGACGAA 75758 >seq810 Length=45355 Score = 172 bits (190), Expect = 2e-38 Identities = 183/232 (79%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 22126 TACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA 22185 ||| ||||| |||||| ||| |||||||||| ||||||||| || ||| |||||||||| Sbjct 30828 TACTCCCCGGCCTGCCGCTCGGCGCAGTACTGATGTAATTCAATAGGCAATCTGCCGACA 30887 Query 22186 TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG 22245 || |||||||| |||||||| ||| ||||||||||||| ||||||||||||||| Sbjct 30888 CATAAAGCATCACAA-CGGCATGAAGAAACTGAATCGCCAGCTAAATCAGCACCTTGTCG 30946 Query 22246 CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCC 22305 ||||||||| | || | || || |||||| | || || || ||| ||||||| || Sbjct 30947 CCTTGCGTA-GACATACGTACACGGCGAAAAC-AGAGCAAATAA-CTGT-CATATTGACC 31002 Query 22306 ACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAA 22357 || ||||||| ||| |||||| || | ||| |||| || ||||||||||| Sbjct 31003 ACACTTAAATCCAAA-TGGTGAGACACTCCC-GGGACTGTATGAGACGAAAA 31052 >seq1552 Length=9583 Score = 165 bits (182), Expect = 3e-36 Identities = 140/159 (88%), Gaps = 15/159 (9%) Strand=Plus/Plus Query 22123 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 9310 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT--GAATTCATTAAGCATTCTGCCG 9367 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 22242 |||||||| |||||||||||||||||||||||||| |||| |||| ||||||||| |||| Sbjct 9368 ACATGGAA-CCATCACAAACGGCATGATGAACCTG-ATCG-CAGC-GCATCAGCA-CTTG 9422 Query 22243 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG 22281 || |||||| |||| | |||| ||| |||||||| Sbjct 9423 -CG-CTTGCG----ATATATTGCCAT-GTG-AAACGGGG 9453 >seq341 Length=141093 Score = 143 bits (158), Expect = 1e-29 Identities = 185/242 (76%), Gaps = 10/242 (4%) Strand=Plus/Minus Query 22125 TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC 22184 |||||||| |||||||||||||||||||| | || || | | |||| |||||| Sbjct 85175 TTACGCCCGACCCTGCCACTCATCGCAGTATCGAAGTTGCTCCCTCAACATTTAGCCGAC 85116 Query 22185 ATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTC 22244 ||| || |||| ||| | | |||| ||||| |||||| ||||| | ||| |||| |||| Sbjct 85115 ATGTAATCCATGTCAAGCAG-ATGAAGAACCCGAATCGTCAGCGTCTTCAACACC-TGTC 85058 Query 22245 GCCTTGCGTATAATATTTGCCCATG-GTGAAAACGGGGGCGAAGAAGTTGT-CCATATTG 22302 ||||||| || |||| || |||| ||| | | | |||| ||||||| |||||||| Sbjct 85057 GCCTTGCTCATCATATCTGTACATGTGTGCCACCCAGTCCGAACAAGTTGTCCCATATTG 84998 Query 22303 GC-CACGTTTAAA-TCAAAACTGGTGAAAC-TCAC-CCAG-GGATTGGCT-GAGACGAAA 22356 || ||| |||||| ||||||||| || | | |||| |||| |||| |||| || |||||| Sbjct 84997 GCTCACCTTTAAACTCAAAACTGCTGGACCTTCACTCCAGTGGATGGGCTCGAAACGAAA 84938 Query 22357 AA 22358 || Sbjct 84937 AA 84936 >seq523 Length=42518 Score = 140 bits (154), Expect = 1e-28 Identities = 233/322 (72%), Gaps = 15/322 (5%) Strand=Plus/Plus Query 22139 GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCAC 22198 ||| ||||||||| |||| | |||||||||| | ||| |||||| || |||| |||| Sbjct 37215 GCCGCTCATCGCAAAACTGCAGCAATTCATTAAACCTTCAGCCGACGAGGGAGCCCTCAC 37274 Query 22199 AAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAAT 22258 | || || || |||| | || ||||| |||||||||||| |||| || || |||| | | Sbjct 37275 ATACAGC-TGCTGAAACAGAGTCGCC-GCGGCATCAGCAGCTTGACGTCT-GCGTG-AGT 37330 Query 22259 ATTTGCCC-ATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA 22317 |||||||| || | || || ||||| ||| | | | | ||||||| | |||||| | | Sbjct 37331 ATTTGCCCTATAGCGACAAGGGGGGGAAAGTACTGGACT-TATTGGCAATGTTTAAGTGA 37389 Query 22318 AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCT 22377 | ||| | | ||| ||| ||| |||||| || | | ||| |||||| | | Sbjct 37390 TACCTGTGGGACCTCCGCCATAGATGGGCTGA-AC-ATAGTCATTTTCTCAT---ATGCA 37444 Query 22378 TTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGA 22437 || |||||| |||| | ||| |||| || | | ||||||||||| |||||||| | Sbjct 37445 TTCAGGAAAT-GGCCTGCTTT-CACCCTACT--GTCCCATCTTGCGAAGATATGTGTTTA 37500 Query 22438 AACTGCCGGAAATCGTCGTGGT 22459 |||||| ||| || ||||||| Sbjct 37501 AACTGCTCGAACTCATCGTGGT 37522 >seq608 Length=60012 Score = 116 bits (128), Expect = 1e-21 Identities = 134/159 (84%), Gaps = 21/159 (13%) Strand=Plus/Minus Query 22123 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||||| Sbjct 41968 AATTACGCCCCGCCCTGC-ACTCATCGCAGTACTGT--GAATTC-TTAAGCA-TCTGCCG 41914 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 22242 |||| |||| |||||| |||||||||||| ||||| |||| |||| ||||||||| |||| Sbjct 41913 ACAT-GAAG-CATCAC-AACGGCATGATG-ACCTG-ATCG-CAGC-GCATCAGCA-CTTG 41862 Query 22243 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG 22281 || |||||| |||| | |||| ||| |||||||| Sbjct 41861 -CG-CTTGCG----ATATATTGCCAT-GTG-AAACGGGG 41831 >seq109 Length=275949 Score = 116 bits (128), Expect = 1e-21 Identities = 133/170 (78%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 22124 ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA 22183 ||||||||||||| || || |||||||||| |||||| |||||||| || ||| ||||| Sbjct 275784 ATTACGCCCCGCC-TGGCATTCATCGCAGT-CTGTTGGTATTCATTA-GC-TTCCGCCGA 275839 Query 22184 CATGGAAGCCATCACAAAC--GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTT 22241 | | || ||||| | | ||| | || ||||| ||||||||||||||||||| Sbjct 275840 CTGGAAACCCATCTTTTATTTGTTTTGAGAACCCGGAATCTCCAGCGGCATCAGCACCTT 275899 Query 22242 -GTCGCC-TTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAA 22289 |||||| ||||| |||| |||||||||||| |||| |||||| || || Sbjct 275900 TGTCGCCCTTGCGAATAAAATTTGCCCATGGGGAAACGGGGGGCCAAAAA 275949 >seq1160 Length=45489 Score = 111 bits (122), Expect = 6e-20 Identities = 99/113 (88%), Gaps = 11/113 (10%) Strand=Plus/Plus Query 22126 TACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA 22185 ||||||| || |||||||||||||||| ||||||||||||||| |||| |||| ||||| Sbjct 45388 TACGCCC-GCGCTGCCACTCATCGCAGGACTGTTGTAATTCAT--AGCA-TCTG-CGACA 45442 Query 22186 TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC 22238 ||| || |||||||||||||||||||| ||| |||| |||| |||||||||| Sbjct 45443 TGGCAG-CATCACAAACGGCATGATGA--CTG-ATCG-CAGC-GCATCAGCAC 45489 >seq436 Length=59167 Score = 104 bits (114), Expect = 9e-18 Identities = 124/167 (74%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 22462 TCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGA 22521 |||||| |||||||||| | || | | |||||||| | || |||| || | | ||| Sbjct 58010 TCACTCGAGAGCGATGAGGATGTAACCATCTGCTCATGACAGACCGTGTGACTATGATGA 57951 Query 22522 ACACTATCCCATATCACCAG-CTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGC 22580 || ||||||||||||| | |||||||||||| ||||| |||||| ||||||||||| Sbjct 57950 TCAATATCCCATATCACTATTCTCACCGTCTTTTTATGCCAAACGGAACTCCGGATGAGC 57891 Query 22581 ATTCATCAGGCGGGCAAGAATGTGAATAAAGGCCGGATAAAACTTGT 22627 ||||| | | | | ||||||| || ||| | ||||| |||| Sbjct 57890 ATTCACCGTGTCGCGATCAATGTGACTACAGGATGTATAAATATTGT 57844 >seq550 Length=79047 Score = 93.3 bits (102), Expect = 2e-14 Identities = 100/116 (86%), Gaps = 15/116 (13%) Strand=Plus/Plus Query 22123 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||| ||||||| |||||||| |||||| ||||| |||||||| || |||||||| Sbjct 78836 AATTAC-CCCCGCC-TGCCACTC-TCGCAG-ACTGTG---ATTCATTA-GC-TTCTGCCG 78886 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC 22238 ||||| |||||||||||| |||||||||||| ||| |||| |||||| |||||||| Sbjct 78887 ACATG-AAGCCATCACAA-CGGCATGATGAA-CTG-ATCG-CAGCGG-ATCAGCAC 78936 >seq654 Length=54183 Score = 84.2 bits (92), Expect = 8e-12 Identities = 97/116 (84%), Gaps = 15/116 (13%) Strand=Plus/Plus Query 22123 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||| Sbjct 53918 AATTACACCCCGCCCTGCCACTCATCGCA-TACTGT--GAATTCATTAAGC-TTCTGCCG 53973 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC 22238 || || | ||||||| |||||| || || ||||| |||| ||||| ||||||| Sbjct 53974 AC-TG--AACCATCAC-AACGGC-TG-TG-ACCTG-ATCG-CAGCG--CTCAGCAC 54018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184437561117990