Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq17 129 7e-25 seq486 91.5 2e-13 seq178 91.5 2e-13 seq149 89.7 6e-13 seq7 84.2 3e-11 >seq17 Length=1338299 Score = 129 bits (142), Expect = 7e-25 Identities = 296/439 (67%), Gaps = 10/439 (2%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || ||||||||||| | |||||| |||| | ||||| || | || | Sbjct 166621 TAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATACCG 166680 Query 110429 GACATCG-TTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCC 110487 | | | | |||| | ||||| | ||| | |||| ||| || ||||| || Sbjct 166681 G-CGTAGCTTGGTTTGGCCATGTGAATGTTGAGTGATTGAGATTGATCGATGAATGCTCC 166739 Query 110488 CCGTTGTGCCGCCATATCAATGACATCCTTCATCTTA-ATTTCCCAAACTGTGCGATAGA 110546 || | || ||||| || || | |||||| | | | || ||||| |||||||| |||| Sbjct 166740 ACGATCAGCAGCCATCTCGATAATCTCCTTC-TGTGAGATCTCCCATACTGTGCGGTAGA 166798 Query 110547 GATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA 110606 | | |||||| ||||||||||| ||| ||| || || ||||| || || | | Sbjct 166799 GTTCCTTGATGTCATCTGGGATTCCTGGGATGTTTTGAATGGA---TCCATTGTTGGCAA 166855 Query 110607 TGAG---ATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGT 110663 |||| | |||||| || | |||||| | || ||| | || |||| | || Sbjct 166856 TGAGTCTGTTCTTCATCTCATCGGACCACAATCCTCTCTCGACCAAATCCTTGAGCATGT 166915 Query 110664 GCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGT 110723 | || ||||| || ||||| | ||| | || |||||| || | ||||| Sbjct 166916 GTGGATTCACAATCTGGAAGTCACCGGAGAGCACACGTCGGGAGTAGATATTGGATGTGT 166975 Query 110724 ATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTG 110783 |||| |||| |||| || || || | ||||| |||||||| || |||||||| |||| Sbjct 166976 ATGGCTCAATAGATTCGTTGTTTCCAAGAATTTGAGCGGTGGAAGCAGTTGGCATCGGTG 167035 Query 110784 CCATCAAAAGACTGTTACG 110802 |||| | ||||||||| || Sbjct 167036 CCATTAGAAGACTGTTGCG 167054 Score = 93.3 bits (102), Expect = 5e-14 Identities = 287/441 (65%), Gaps = 5/441 (1%) Strand=Plus/Plus Query 110939 TCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998 ||||||||||| || || || || || | || | || || ||||| ||||| || Sbjct 167245 TCAGCCAATTCGCAACTGGCTTCGAGAGCAGCATAGTAGATTGTTTCGAAGATGCGCTTG 167304 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 |||| || ||||| | |||||| |||| | | | ||| || || ||| ||| Sbjct 167305 TTCAAATCTCTGGCTCCTTCTGAAGTGAATGGGAATCTCATCAACATGAAACAATCAGCG 167364 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 || |||||||| || | ||||| || | || ||||| || || || || || ||| Sbjct 167365 AGTCCTTGAACTCCAAGTCCAATTGGACGATGACGCATGTTCGAGTTACGTGCTTCTTCA 167424 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 || || ||| |||| || |||| ||| |||||||| || | | || || | Sbjct 167425 ACTGGGTAATAATTGACATCGATGATCTTGTTCAGATTTTTCGTTATCACTTTGGTAACC 167484 Query 111179 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATA-CTTTGGAAGGGC 111237 ||| ||| || | ||||||| || |||| | ||||| | | | | || || Sbjct 167485 TCAGCAAGCTTCTTGAAATCAAACGT---CTTCTCAGGAGTGACAAATCGGTTG-AGAGC 167540 Query 111238 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 111297 ||| || || | |||||| ||||| ||||||| | | | |||||| | ||||| || Sbjct 167541 GATAGAAGCAAGATTGCAGACAGCGATCTCATCTGGAGCAGAGTACTCGATGATTTCCGT 167600 Query 111298 ACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGC 111357 || | ||||| | || || || || | || | ||| || ||| ||| || Sbjct 167601 GCACAGATTGGAGCATTTGATGGTTCCGAGGTTTTGTTGATTGGACTTGCGATTGGCAGC 167660 Query 111358 ATCCTTGTAGAGCATGTAGGG 111378 |||||||||| ||||| || Sbjct 167661 ATCCTTGTAGGTGATGTATGG 167681 >seq486 Length=71490 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || || |||||||| ||||||||||| | |||||||||| ||| | | ||| || | Sbjct 49031 CCTACAGCATCAATTTCATCAATGAACAAAATACATGGTGAATTCTTCCTGGCCATGGAA 49090 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | ||| ||||| ||| | || || ||||||||||| || | ||| | || || Sbjct 49091 AACATATCACGAACTCTTGCTGGTCCGACTCCAACAAACATTTCGAGAAATTCTGATCCA 49150 Query 11744 GAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802 ||| || | |||||||| ||||||| ||| || || | || || || || || || Sbjct 49151 GAGACAGT-AATGAATGGTACATTTGCTTCTCCTGCTGTTGCCTTAGCTAGAAGTGTTTT 49209 Query 11803 TCCCGTACCTGG 11814 |||||| || || Sbjct 49210 TCCCGTTCCCGG 49221 >seq178 Length=305597 Score = 91.5 bits (100), Expect = 2e-13 Identities = 245/369 (66%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 || ||||| || || || || || || ||| || ||||| || | || || || ||| Sbjct 261601 TCGAAACGTCCAGGACGGAGAAGTGCAGAATCGAGAATATCAACTCTGTTCGTAGCAGCA 261542 Query 11513 ATAACCACAATGCCAGTCTCAT-TGTCA--AAGCCATCCATCTCGGTGAGTAATTGATTA 11569 || || | || || ||| | ||| || |||||||| || |||| |||||| Sbjct 261541 ATGACAATAACTGAAGACTCGTCTGTTGTGAATCCATCCATTTCAACAAGTAGTTGATTG 261482 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGC---CC 11626 | ||| | |||| ||| || || ||| || || | | | |||| | | Sbjct 261481 AGTGTGTTTTCTTGTTCAGAATGACCTCCCATTCCTCCTTTTCCTCCTCGCTTTCTTCCT 261422 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||| ||||| | |||||||||| ||| | | ||| || ||| Sbjct 261421 ACAGCATCAATTTCATCGATGAACAAAATACATGGTGAATTCTTCCTGGCCATGGAAAAC 261362 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 | ||| ||||| ||| | || || ||||||||||| || | ||| | || ||||| Sbjct 261361 ATATCACGAACTCTTGCTGGTCCGACTCCAACAAACATTTCGAGAAATTCTGATCCAGAG 261302 Query 11747 -CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805 || | |||||||| ||||||| ||| || || | || || || || || ||||| Sbjct 261301 ACAGT-AATGAATGGTACATTTGCTTCTCCTGCTGTTGCCTTAGCTAGAAGTGTTTTTCC 261243 Query 11806 CGTACCTGG 11814 ||| || || Sbjct 261242 CGTTCCCGG 261234 >seq149 Length=436469 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 182696 TTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAAC 182755 ||| || ||||||||||| || ||||| | |||||||| ||||||| ||||| ||||| Sbjct 107745 TTTTCCTCGAAGTGGGAAGACTCCGTACTTGTCACGACCGACGACAGCAAGACCGGCAAC 107686 Query 182756 CGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACT 182802 || | ||||| || ||||| |||||||||| || | ||||||| Sbjct 107685 TGCCAAAGTTTTGGCAGAATCTCCCTCCGTGAGGATCAATGTACACT 107639 >seq7 Length=1891389 Score = 84.2 bits (92), Expect = 3e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 122379 GACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAA 122438 ||| |||||||| |||||||||||||| ||||| | | ||||| ||||| ||||| || Sbjct 173926 GACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATGGAGATGTTCTCCATGAAGTCGAA 173985 Query 122439 TGGATTCTTCGCGTTCCA-AATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACA 122497 ||| |||||| | || | || || ||| || | || | ||| | |||||| | Sbjct 173986 TGGGTTCTTCACCTTGAACAACTTGTCGCATCCGAGCTCG-GCGAGCAAGTGATCCGCGA 174044 Query 122498 CATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGTG 122557 | |||||||||||| ||||| | ||||||| ||||| | || ||| |||| Sbjct 174045 CGAACTCAATGTACTGCGACATGAGACGACAGTTCATTCCGATCATGTCGACTGGAAGTG 174104 Query 122558 CGTCCAAGATGAACCCTTTCTCAAT 122582 | || || |||| | | ||| || Sbjct 174105 CCTCGGTGAGGAACTCCTGCTCGAT 174129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628006054428000